RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ZNF440Q8IYI8 595 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 LIX1Q8N485 282 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 LFNGQ8NES3 379 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 OR6Q1Q8NGQ2 317 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 ADAMTS19Q8TE59 1207 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 TCTEX1D2Q8WW35 142 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 COPS8Q99627 209 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 COMMD4Q9H0A8 199 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 MIR1-1HGQ9H1L0 117 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 COQ10BQ9H8M1 238 aa5.1□□□□□ -1.59
SCN1A-201ENST00000303395 ARAP2Q8WZ64 1704 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 RAD1O60671 282 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 LPLP06858 475 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 TXNP10599 105 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 IRF2P14316 349 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ITPKBP27987 946 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 HSPA14Q0VDF9 509 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 BMPR2Q13873 1038 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 TBRG1Q3YBR2 411 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 TMEM164Q5U3C3 297 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 OVOS1Q6IE37 1185 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SVBPQ8N300 66 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 FAM98AQ8NCA5 519 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CHST4Q8NCG5 386 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ATP6V1C2Q8NEY4 427 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 OR4F6Q8NGB9 312 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 OR14K1Q8NGZ2 314 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ALPK1Q96QP1 1244 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 DOK1Q99704 481 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 LDAHQ9H6V9 325 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 TMEM165Q9HC07 324 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF226Q9NYT6 803 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 FAM86B1E9PN63 330 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 RFPL1O75677 317 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SNAPINO95295 136 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CRYZL1O95825 349 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 C4BPAP04003 597 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 FAM86B2P0C5J1 330 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 RBMS1P29558 406 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 GSK3BP49841 420 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 APLP1P51693 650 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 TRA2BP62995 288 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ASAH1Q13510 395 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 MLC1Q15049 377 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 GGTA1PQ4G0N0 100 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ACTBL2Q562R1 376 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 HES5Q5TA89 166 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 TPGS1Q6ZTW0 290 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SIAH1Q8IUQ4 282 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF611Q8N823 705 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 KCT2Q8NC54 265 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 OR8H1Q8NGG4 311 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 FBXW5Q969U6 566 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SIGLEC10Q96LC7 697 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CIB1Q99828 191 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SLC6A7Q99884 636 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CHRAC1Q9NRG0 131 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ABRACLQ9P1F3 81 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SLC17A7Q9P2U7 560 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CIB4A0PJX0 185 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 LRRC72A6NJI9 287 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 MITFO75030 526 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ALX3O95076 343 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 RHOCP08134 193 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 UBBP0CG47 229 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 UBCP0CG48 685 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 NUMBP49757 651 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 RPS27AP62979 156 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 UBA52P62987 128 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 PCDH1Q08174 1060 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 EIF2B1Q14232 305 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 HLFQ16534 295 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 WSCD2Q2TBF2 565 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 SLC36A3Q495N2 470 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 LBHQ53QV2 105 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ASB18Q6ZVZ8 466 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ZER1Q7Z7L7 766 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 OR52K2Q8NGK3 314 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CEP76Q8TAP6 659 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ASB15Q8WXK1 588 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CNOT9Q92600 299 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CMTM7Q96FZ5 175 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 TMEM80Q96HE8 168 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 MTERF1Q99551 399 aaKnown RBP5.09□□□□□ -1.59
SCN1A-201ENST00000303395 DGCR6LQ9BY27 220 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 HPF1Q9NWY4 346 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ABCD2Q9UBJ2 740 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 HIF3AQ9Y2N7 669 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CMAHPQ9Y471 501 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CPQQ9Y646 472 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 A0A0D9SG52 128 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 BTN3A1O00481 513 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 EPHB6O15197 1021 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CLEC3AO75596 197 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 ATG12O94817 140 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 F10P00742 488 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 CSF1P09603 554 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 EPHA4P54764 986 aa5.09□□□□□ -1.59
SCN1A-201ENST00000303395 NCS1P62166 190 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms