RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 CLCNKAP51800 687 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 DGKQP52824 942 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 ARSFP54793 590 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 NUP107P57740 925 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 MTPNP58546 118 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 CTBSQ01459 385 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 SELPLGQ14242 412 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 MYBPC3Q14896 1274 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 RUNDC3AQ59EK9 446 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 ENPP7Q6UWV6 458 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 XKR5Q6UX68 686 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 PYCR2Q96C36 320 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 BMFQ96LC9 184 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 SEPHS2Q99611 448 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 OSGEPL1Q9H4B0 414 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 CARS2Q9HA77 564 aaKnown RBP16.16■□□□□ 0.18
CPSF4-201ENST00000292476 NTN4Q9HB63 628 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 DDX18Q9NVP1 670 aaKnown RBP16.16■□□□□ 0.18
CPSF4-201ENST00000292476 VAPAQ9P0L0 249 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 DNAJB9Q9UBS3 223 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 FBXO4Q9UKT5 387 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 DYRK1BQ9Y463 629 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 PCDHGA11Q9Y5H2 935 aa16.16■□□□□ 0.18
CPSF4-201ENST00000292476 PGRP06401 933 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 JUPP14923 745 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 NELFEP18615 380 aaKnown RBP16.15■□□□□ 0.18
CPSF4-201ENST00000292476 MAPK1P28482 360 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 HALP42357 657 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 HLCSP50747 726 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 IRF8Q02556 426 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 FAM174BQ3ZCQ3 159 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 USP39Q53GS9 565 aaKnown RBP16.15■□□□□ 0.18
CPSF4-201ENST00000292476 LRIF1Q5T3J3 769 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 ARHGAP22Q7Z5H3 698 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 LIX1Q8N485 282 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 TMEM145Q8NBT3 493 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 MAGEE2Q8TD90 523 aaPredicted RBP16.15■□□□□ 0.18
CPSF4-201ENST00000292476 ZNF480Q8WV37 535 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 AURKBQ96GD4 344 aaPredicted RBP16.15■□□□□ 0.18
CPSF4-201ENST00000292476 DOK1Q99704 481 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 MYOCQ99972 504 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 RAB11FIP5Q9BXF6 653 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 PCBD2Q9H0N5 130 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 IRF2BPLQ9H1B7 796 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 ELOVL6Q9H5J4 265 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 ETAA1Q9NY74 926 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 USE1Q9NZ43 259 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 USP22Q9UPT9 525 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 TMED5Q9Y3A6 229 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 PCYT1BQ9Y5K3 369 aaPredicted RBP16.15■□□□□ 0.18
CPSF4-201ENST00000292476 ANKRD12Q6UB98 2062 aa16.15■□□□□ 0.18
CPSF4-201ENST00000292476 A0A096LPI6 279 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 ELOVL7A1L3X0 281 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 GSTA4O15217 222 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 DFNA5O60443 496 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 NDUFS2O75306 463 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 ALPLP05186 524 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 ITPKAP23677 461 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 CLDN8P56748 225 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 CLDN2P57739 230 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 CHIT1Q13231 466 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 ZXDCQ2QGD7 858 aaPredicted RBP16.14■□□□□ 0.18
CPSF4-201ENST00000292476 MAMSTRQ6ZN01 415 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 GCNT7Q6ZNI0 430 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 ABI3BPQ7Z7G0 1075 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 DCP2Q8IU60 420 aaKnown RBP16.14■□□□□ 0.18
CPSF4-201ENST00000292476 MICU2Q8IYU8 434 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 RGL4Q8IZJ4 473 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 TMIGD2Q96BF3 282 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 SDCCAG3Q96C92 435 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 REPS1Q96D71 796 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 FBXL20Q96IG2 436 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 HHIPQ96QV1 700 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 SGPP1Q9BX95 441 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 EHD1Q9H4M9 534 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 C6orf106Q9H6K1 298 aaPredicted RBP16.14■□□□□ 0.18
CPSF4-201ENST00000292476 MVB12BQ9H7P6 319 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 RMND5AQ9H871 391 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 CD93Q9NPY3 652 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 CCDC177Q9NQR7 707 aaPredicted RBP16.14■□□□□ 0.18
CPSF4-201ENST00000292476 TM7SF3Q9NS93 570 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 TMEM9Q9P0T7 183 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.14■□□□□ 0.18
CPSF4-201ENST00000292476 R4GN57 208 aa16.14■□□□□ 0.18
CPSF4-201ENST00000292476 SEC22BO75396 215 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 SNAP29O95721 258 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 FUCA1P04066 466 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 IGHV4-34P06331 123 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 THRBP10828 461 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 EPORP19235 508 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 NDUFS1P28331 727 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 PCSK6P29122 969 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 CDH15P55291 814 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 KRT33BQ14525 404 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 PTGR1Q14914 329 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 CPSF6Q16630 551 aaKnown RBP eCLIP16.14■□□□□ 0.17
CPSF4-201ENST00000292476 UAP1L1Q3KQV9 507 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 CCSMST1Q4G0I0 132 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 XKR6Q5GH73 641 aa16.14■□□□□ 0.17
CPSF4-201ENST00000292476 GRHL2Q6ISB3 625 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms