RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 RNF167Q9H6Y7 350 aa16■□□□□ 0.15
VPS54-201ENST00000272322 SCN8AQ9UQD0 1980 aa16■□□□□ 0.15
VPS54-201ENST00000272322 ZNF197O14709 1029 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 LILRB3O75022 631 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 OCM2P0CE71 109 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 OCMP0CE72 109 aaPredicted RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 C7P10643 843 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 PTNP21246 168 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 MNX1P50219 401 aaPredicted RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 AP1S2P56377 157 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 GBX1Q14549 363 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 HENMT1Q5T8I9 393 aaKnown RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 MEX3DQ86XN8 651 aaKnown RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 ABHD11Q8NFV4 315 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 OR5AR1Q8NGP9 310 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.99■□□□□ 0.15
VPS54-201ENST00000272322 DNAAF2Q9NVR5 837 aaKnown RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 LMCD1Q9NZU5 365 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 OGDHLQ9ULD0 1010 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 ZNF510Q9Y2H8 683 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 IGLV3-16A0A075B6K0 115 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 ANKRD33BA6NCL7 494 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 TMEM247A6NEH6 219 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 SEC14L2O76054 403 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 CRYBA2P53672 197 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 DNASE1L3Q13609 305 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 DHCR24Q15392 516 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 PRR23BQ6ZRT6 265 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 NPAS3Q8IXF0 933 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 UCN3Q969E3 161 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 LMLNQ96KR4 655 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 CCM2Q9BSQ5 444 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 CPEB1Q9BZB8 566 aaKnown RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 SNX11Q9Y5W9 270 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 LAMA1P25391 3075 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 BRWD1Q9NSI6 2320 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 ZNF99A8MXY4 864 aaPredicted RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 PTPN2P17706 415 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 FEN1P39748 380 aaKnown RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 SRSF11Q05519 484 aaKnown RBP15.99■□□□□ 0.15
VPS54-201ENST00000272322 RGNQ15493 299 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 ZNF805Q5CZA5 627 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 EGFLAMQ63HQ2 1017 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 SLC5A8Q8N695 610 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 PLA2G15Q8NCC3 412 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 ADAMTS16Q8TE57 1224 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 ZFP90Q8TF47 636 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 TESCQ96BS2 214 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 RAD18Q9NS91 495 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 SCN3BQ9NY72 215 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 PCDHB11Q9Y5F2 797 aa15.99■□□□□ 0.15
VPS54-201ENST00000272322 SCAMP2O15127 329 aaKnown RBP15.98■□□□□ 0.15
VPS54-201ENST00000272322 GSTM2P28161 218 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 IDUAP35475 653 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 KRT20P35900 424 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 SLC5A12Q1EHB4 618 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 ARHGAP15Q53QZ3 475 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 RBM48Q5RL73 367 aaKnown RBP15.98■□□□□ 0.15
VPS54-201ENST00000272322 ERAP2Q6P179 960 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 MED27Q6P2C8 311 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 VANGL1Q8TAA9 524 aaPredicted RBP15.98■□□□□ 0.15
VPS54-201ENST00000272322 JPH3Q8WXH2 748 aaPredicted RBP15.98■□□□□ 0.15
VPS54-201ENST00000272322 MIEF1Q9NQG6 463 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 ANKDD1BA6NHY2 528 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 TRIM64CA6NLI5 447 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 TNFRSF11BO00300 401 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 GSTM1P09488 218 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 IDSP22304 550 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 HOXA9P31269 272 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 DNAJA1P31689 397 aaKnown RBP15.98■□□□□ 0.15
VPS54-201ENST00000272322 PPM1AP35813 382 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 PRKAG1P54619 331 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 GSTM4Q03013 218 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 HSPB3Q12988 150 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 CAMK2GQ13555 558 aaPredicted RBP15.98■□□□□ 0.15
VPS54-201ENST00000272322 PRSS53Q2L4Q9 553 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 ADPRMQ3LIE5 342 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 ADCK1Q86TW2 530 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 TCAIMQ8N3R3 496 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 FAR1Q8WVX9 515 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 ITM2CQ9NQX7 267 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 SH3PXD2BA1X283 911 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 TBC1D3BA6NDS4 549 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 SLCO2B1O94956 709 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 NPPBP16860 134 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 TTKP33981 857 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 ARHGEF6Q15052 776 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 SHQ1Q6PI26 577 aaKnown RBP15.98■□□□□ 0.15
VPS54-201ENST00000272322 RAB2BQ8WUD1 216 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 MRGPRX3Q96LB0 322 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 NIPSNAP1Q9BPW8 284 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 ZSCAN5AQ9BUG6 496 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 XKR8Q9H6D3 395 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 GPATCH2Q9NW75 528 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 EXO1Q9UQ84 846 aaKnown RBP15.98■□□□□ 0.15
VPS54-201ENST00000272322 PCDHGA10Q9Y5H3 936 aa15.98■□□□□ 0.15
VPS54-201ENST00000272322 CNTRLQ7Z7A1 2325 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 TANC1Q9C0D5 1861 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 MICAL3Q7RTP6 2002 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 GRXCR1A8MXD5 290 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms