RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 LEPRP48357 1165 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CAMK2DQ13557 499 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 KCTD18Q6PI47 426 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 GET4Q7L5D6 327 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 C6orf120Q7Z4R8 191 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CMC1Q7Z7K0 106 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 SMG8Q8ND04 991 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 OR13C3Q8NGS6 347 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 AP2A1O95782 977 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 GPX6P59796 221 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF404Q494X3 552 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 NT5DC1Q5TFE4 455 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 OR2T5Q6IEZ7 315 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 DPY19L4Q7Z388 723 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 LGI4Q8N135 537 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 OR2T29Q8NH02 315 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 MAPK15Q8TD08 544 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 HPSEQ9Y251 543 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 PCDHB3Q9Y5E6 796 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 DLDP09622 509 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 PRKCIP41743 596 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 RUNX2Q13950 521 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 DAG1Q14118 895 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ESCO2Q56NI9 601 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 LRRC52Q8N7C0 313 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 AQP11Q8NBQ7 271 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 SECISBP2Q96T21 854 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CA5BQ9Y2D0 317 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 SERPINA7P05543 415 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CHRNB2P17787 502 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CCNHP51946 323 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 PPIGQ13427 754 aaKnown RBP eCLIP13.54□□□□□ -0.242e-7■□□□□ 10.9
CCDC88A-201ENST00000263630 CYP4V2Q6ZWL3 525 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 SH3RF1Q7Z6J0 888 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CNTNAP3BQ96NU0 1288 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ST14Q9Y5Y6 855 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ESR1P03372 595 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CHRM5P08912 532 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 HNRNPKP61978 463 aaKnown RBP eCLIP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 C14orf28Q4W4Y0 310 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ARL13AQ5H913 290 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 PIGZQ86VD9 579 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 FANK1Q8TC84 345 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF675Q8TD23 568 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 YIPF4Q9BSR8 244 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 WDR55Q9H6Y2 383 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 PPP4R1LQ9P1A2 415 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 PCDHGA2Q9Y5H1 932 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 MAP3K4Q9Y6R4 1608 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 A6NHS1 94 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 HMX3A6NHT5 357 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ETFAP13804 333 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 VSX2P58304 361 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 COL21A1Q96P44 957 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 MAGI2Q86UL8 1455 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 MT-ND1P03886 318 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 H2AFB2P0C5Z0 115 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 AKR1C2P52895 323 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 MLLT1Q03111 559 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 RNF208Q9H0X6 261 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 TPT1P8Q9HAU6 139 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 HECW2Q9P2P5 1572 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 ERVK-8P63133 956 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 TUSC3Q13454 348 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 RALGPS1Q5JS13 557 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 FAM198BQ6UWH4 519 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 CFAP52Q8N1V2 620 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 OR5T1Q8NG75 326 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 OR6K2Q8NGY2 324 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 TTPALQ9BTX7 342 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 AQP12BA6NM10 295 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 F8W036 122 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 TNFP01375 233 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 CORO1AP31146 461 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 BLOC1S1P78537 153 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC18A2Q05940 514 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 PTPRRQ15256 657 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 UGT8Q16880 541 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 AQP12AQ8IXF9 295 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 PHOX2BQ99453 314 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 SMCO4Q9NRQ5 59 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 EPHA6Q9UF33 1036 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 DISP2A7MBM2 1401 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 FAM149AA5PLN7 773 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 CNTN2Q02246 1040 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 POU4F2Q12837 409 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 FIGNL1Q6PIW4 674 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 OR56A1Q8NGH5 318 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 MROQ9BYG7 248 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 DUS2Q9NX74 493 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 MAOAP21397 527 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 CHATP28329 748 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 CDKN1CP49918 316 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 SCNN1GP51170 649 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 TGFB2P61812 414 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 MEDAGQ5VYS4 303 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 MFSD5Q6N075 450 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 CMTM1Q8IZ96 169 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 OR2S2Q9NQN1 319 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 FNIP2Q9P278 1114 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms