RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MAGEH1Q9H213 219 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 FBXO8Q9NRD0 319 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 HEBP1Q9NRV9 189 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 CLCA2Q9UQC9 943 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 ANGPT4Q9Y264 503 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 POFUT2Q9Y2G5 429 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 LAMB2P55268 1798 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 LOXHD1Q8IVV2 1947 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 SLC30A4O14863 429 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 TLX2O43763 284 aaPredicted RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 ORC5O43913 435 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 ACSL4O60488 711 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 KCNK2O95069 426 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 CLDN7O95471 211 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 EPOP01588 193 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 ATXN1LP0C7T5 689 aaKnown RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 DDX5P17844 614 aaKnown RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 WEE1P30291 646 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 HK3P52790 923 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 TARDBPQ13148 414 aaKnown RBP eCLIP10.68□□□□□ -0.7
CLN3-244ENST00000636147 TAF1CQ15572 869 aaPredicted RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 CHRNA6Q15825 494 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 GPR162Q16538 588 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 CCDC58Q4VC31 144 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 CXorf57Q6NSI4 855 aaKnown RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 NOXRED1Q6NXP6 359 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 SUSD1Q6UWL2 747 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 PLEKHM3Q6ZWE6 761 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 ZFP41Q8N8Y5 198 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 OR5H6Q8NGV6 325 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 POLR2J3Q9H1A7 115 aaKnown RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 KCTD5Q9NXV2 234 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 CCDC59Q9P031 241 aaKnown RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 H0YC42 278 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 NUDT7P0C024 238 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 CORO1AP31146 461 aaKnown RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 SDC2P34741 201 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 CDKN2CP42773 168 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 LRRC66Q68CR7 880 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 FAM180BQ6P0A1 224 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 C9orf43Q8TAL5 461 aaPredicted RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 DEDD2Q8WXF8 326 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 KLHL6Q8WZ60 621 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 GGHQ92820 318 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 SIPA1Q96FS4 1042 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 APIPQ96GX9 242 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 ZNF419Q96HQ0 510 aaPredicted RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 PSD2Q9BQI7 771 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 SLC32A1Q9H598 525 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 MAGIXQ9H6Y5 334 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 BRD9Q9H8M2 597 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 A0A0G2JLL6 359 aaPredicted RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 ISM1B1AKI9 464 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 TLR4O00206 839 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 SLC16A6O15403 523 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 SSX4O60224 188 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 SNAI1O95863 264 aaPredicted RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 PRKACBP22694 351 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 RGRP47804 291 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 PTSQ03393 145 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 CSTF1Q05048 431 aaKnown RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 KEAP1Q14145 624 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 ATP13A5Q4VNC0 1218 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 DCST1Q5T197 706 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 RGMBQ6NW40 437 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 PRRT2Q7Z6L0 340 aaPredicted RBP10.68□□□□□ -0.7
CLN3-244ENST00000636147 PHYKPLQ8IUZ5 450 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 PGBD5Q8N414 524 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 XAGE5Q8WWM1 108 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 KAT2AQ92830 837 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 MSANTD3Q96H12 275 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 OR5M11Q96RB7 305 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 FAM83DQ9H4H8 585 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 VNN3Q9NY84 501 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 VPS29Q9UBQ0 182 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 RIMKLBQ9ULI2 386 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 DYRK1BQ9Y463 629 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 CMAHPQ9Y471 501 aa10.68□□□□□ -0.7
CLN3-244ENST00000636147 TRBC2A0A5B9 178 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 CLDN11O75508 207 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 DHFRP00374 187 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 EBLN1P0CF75 366 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 PPIBP23284 216 aaKnown RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 MAPKAPK2P49137 400 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 PLD1Q13393 1074 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 SCARB2Q14108 478 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 SPHARQ15513 63 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 IRAK1BP1Q5VVH5 260 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 PHC2Q8IXK0 858 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 B3GNT7Q8NFL0 401 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 MDGA1Q8NFP4 955 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ZNF300Q96RE9 604 aaPredicted RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 PARK7Q99497 189 aaKnown RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 ZSCAN5AQ9BUG6 496 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 SLIRPQ9GZT3 109 aaKnown RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 DUSP21Q9H596 190 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 SEMA3GQ9NS98 782 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ACSL6Q9UKU0 697 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 DOCK5Q9H7D0 1870 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 TRAV6A0A075B6T7 132 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms