RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 PCBD2Q9H0N5 130 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 PRORYQ9H606 182 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 WASH6PQ9NQA3 447 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 GEMIN8Q9NWZ8 242 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 NOP53Q9NZM5 478 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ZNF624Q9P2J8 865 aaPredicted RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ICKQ9UPZ9 632 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 COLEC10Q9Y6Z7 277 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 KNTC1P50748 2209 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 AIM2O14862 343 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ATXN7O15265 892 aaPredicted RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 PRICKLE3O43900 615 aaPredicted RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 SORBS2O94875 1100 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ETHE1O95571 254 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 SNRPB2P08579 225 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 G6PDP11413 515 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 MTHFD1P11586 935 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 SLC2A4P14672 509 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 NDUFS1P28331 727 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 EPHA8P29322 1005 aaPredicted RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 PKLRP30613 574 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 NUDT2P50583 147 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 RAB28P51157 221 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 RPL38P63173 70 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 STX5Q13190 355 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 SHBQ15464 509 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ZNF542PQ5EBM4 170 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 PAGE2BQ5JRK9 111 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 FBXW10Q5XX13 1052 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ATG9BQ674R7 924 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 SLC30A9Q6PML9 568 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 BLOC1S3Q6QNY0 202 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ZFAND4Q86XD8 727 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 FAM129CQ86XR2 697 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 MARCH9Q86YJ5 346 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 GATAD2AQ86YP4 633 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ZNF740Q8NDX6 193 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 OR7G3Q8NG95 312 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 OR52E1Q8NGJ3 308 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 GPBAR1Q8TDU6 330 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 SMPDL3AQ92484 453 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 REPS1Q96D71 796 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 KLHDC7BQ96G42 594 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 NPAS2Q99743 824 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 EFCAB11Q9BUY7 163 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 SLC25A23Q9BV35 468 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 ACAT2Q9BWD1 397 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 MMADHCQ9H3L0 296 aaPredicted RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 EHD1Q9H4M9 534 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 XKR8Q9H6D3 395 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 EFCAB1Q9HAE3 211 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 LRTM1Q9HBL6 345 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 PRM3Q9NNZ6 103 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 C1orf109Q9NX04 203 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 EIF3LQ9Y262 564 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 DLGAP4Q9Y2H0 992 aa9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 POLR3HQ9Y535 204 aaPredicted RBP9.13□□□□□ -0.95
PDLIM5-223ENST00000627587 IGKV1-8A0A0C4DH67 115 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 SEC22BO75396 215 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 TBX6O95947 436 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 C1GALT1C1LP0DN25 315 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 PEBP1P30086 187 aaKnown RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 PGM1P36871 562 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 BLKP51451 505 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 MEF2AQ02078 507 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 CSTF3Q12996 717 aaKnown RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 TARDBPQ13148 414 aaKnown RBP eCLIP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 LAPTM5Q13571 262 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 RCAN2Q14206 197 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 PTGR1Q14914 329 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 HIST2H2ACQ16777 129 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 MMEL1Q495T6 779 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 PDCD4Q53EL6 469 aaKnown RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 IL23RQ5VWK5 629 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 HIST2H2AA3Q6FI13 130 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 C8orf82Q6P1X6 216 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 MED27Q6P2C8 311 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 NXPE4Q6UWF7 544 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 RIPOR1Q6ZS17 1223 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 VN1R5Q7Z5H4 357 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 PARGQ86W56 976 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 C17orf64Q86WR6 236 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 DCP2Q8IU60 420 aaKnown RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 LAS2Q8IYD9 372 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 C10orf67Q8IYJ2 551 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 PHACTR4Q8IZ21 702 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 DSELQ8IZU8 1212 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 EFCAB3Q8N7B9 438 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 KYQ8NBH2 561 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 OR2A1Q8NGT9 310 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 SNIP1Q8TAD8 396 aaKnown RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 FGF11Q92914 225 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 APIPQ96GX9 242 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 FCRL1Q96LA6 429 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 MTERF1Q99551 399 aaKnown RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 MRPL1Q9BYD6 325 aaKnown RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 GSDMCQ9BYG8 508 aa9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 CUEDC1Q9NWM3 386 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-223ENST00000627587 NDE1Q9NXR1 346 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms