RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ADAMDEC1O15204 470 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 RAB40ALP0C0E4 278 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 PFKFB1P16118 471 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 GPX3P22352 226 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 SLC1A4P43007 532 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 NRIP1P48552 1158 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 OR1D5P58170 312 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 ARF3P61204 181 aaPredicted RBP1.93□□□□□ -2.1
SCN1A-208ENST00000625916 HNRNPKP61978 463 aaKnown RBP eCLIP1.93□□□□□ -2.1
SCN1A-208ENST00000625916 ARF1P84077 181 aaKnown RBP1.93□□□□□ -2.1
SCN1A-208ENST00000625916 SNAPC1Q16533 368 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 C15orf59Q2T9L4 293 aaPredicted RBP1.93□□□□□ -2.1
SCN1A-208ENST00000625916 ZCCHC12Q6PEW1 402 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 RYBPQ8N488 228 aaPredicted RBP1.93□□□□□ -2.1
SCN1A-208ENST00000625916 OR4C15Q8NGM1 316 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 ATL1Q8WXF7 558 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 TSACCQ96A04 125 aaPredicted RBP1.93□□□□□ -2.1
SCN1A-208ENST00000625916 MAPKAP1Q9BPZ7 522 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 PI4K2AQ9BTU6 479 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 ZNF275Q9NSD4 429 aaPredicted RBP1.93□□□□□ -2.1
SCN1A-208ENST00000625916 Q9UF83 564 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 RNF150Q9ULK6 438 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 CCDC189A1A4V9 331 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 PGPEP1LA6NFU8 196 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 J3KRW8 73 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 INPP4BO15327 924 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 MAGEB2O15479 319 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 TNFSF12O43508 249 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 USO1O60763 962 aaKnown RBP1.92□□□□□ -2.1
SCN1A-208ENST00000625916 SAP30O75446 220 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 RPS6KA5O75582 802 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 MBD4O95243 580 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 CD1DP15813 335 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 ELK1P19419 428 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 GIFP27352 417 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 MPP1Q00013 466 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 NAAAQ02083 359 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 RASGEF1BQ0VAM2 473 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 NONOQ15233 471 aaKnown RBP eCLIP1.92□□□□□ -2.1
SCN1A-208ENST00000625916 LTB4RQ15722 352 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 CCDC70Q6NSX1 233 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 IGFL2Q6UWQ7 119 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 TIFABQ6ZNK6 161 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 IL17RELQ6ZVW7 336 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 MCM10Q7L590 875 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 C17orf53Q8N3J3 647 aaPredicted RBP1.92□□□□□ -2.1
SCN1A-208ENST00000625916 RASGEF1AQ8N9B8 481 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 OR10S1Q8NGN2 331 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 OR5M9Q8NGP3 310 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 PPP1R16AQ96I34 528 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 NEDD4LQ96PU5 975 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 SLC2A11Q9BYW1 496 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 CDH20Q9HBT6 801 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 GSN-AS1Q9NRJ2 163 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 DHRS4-AS1Q9P1J3 65 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 IL36AQ9UHA7 158 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 RSPH14Q9UHP6 348 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 CLEC4EQ9ULY5 219 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 RPS6KL1Q9Y6S9 549 aa1.92□□□□□ -2.1
SCN1A-208ENST00000625916 NEDD4P46934 1319 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 A0A1W2PQ09 198 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 EPB41L2O43491 1005 aaKnown RBP1.91□□□□□ -2.1
SCN1A-208ENST00000625916 ZNF253O75346 499 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 KBTBD11O94819 623 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 ZNF853P0CG23 659 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 GCH1P30793 250 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 LHX1P48742 406 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 STAT2P52630 851 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 GCKRQ14397 625 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 NPTX1Q15818 432 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 CBWD6Q4V339 395 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 CBWD3Q5JTY5 395 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 PLEKHS1Q5SXH7 462 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 OR6T1Q8NGN1 323 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 U2AF1L4Q8WU68 220 aaKnown RBP1.91□□□□□ -2.1
SCN1A-208ENST00000625916 ROBO4Q8WZ75 1007 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 CASP10Q92851 521 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 NABP1Q96AH0 204 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 IL12RB2Q99665 862 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 SDCBP2Q9H190 292 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 SP140LQ9H930 580 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 SLC24A2Q9UI40 661 aa1.91□□□□□ -2.1
SCN1A-208ENST00000625916 RSPH10B2B2RC85 870 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 KRTAP4-16G5E9R7 235 aaPredicted RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 TNFSF11O14788 317 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 CREB3O43889 395 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 SRPX2O60687 465 aaPredicted RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 PTP4A3O75365 173 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 SEMA4FO95754 770 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 LINGO3P0C6S8 592 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 RSPH10BP0C881 870 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 SAGP10523 405 aaPredicted RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 ODC1P11926 461 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 ZNF17P17021 662 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 FCGR2BP31994 310 aaPredicted RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 FCGR2CP31995 323 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 SFTPDP35247 375 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 ZNF133P52736 654 aaPredicted RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 IST1P53990 364 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 KNOP1Q1ED39 458 aaKnown RBP1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms