RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PROCRQ9UNN8 238 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 PLEKHM1Q9Y4G2 1056 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 PCDHGB5Q9Y5G0 923 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TRPM6Q9BX84 2022 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 A8MU76 341 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 B4DGG1 531 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 TMEM233B4DJY2 109 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 RTCAO00442 366 aaKnown RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 POLR1CO15160 346 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 NUDT21O43809 227 aaKnown RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 GUCY1B2O75343 617 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 CCNDBP1O95273 360 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 MT-ND3P03897 115 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 SRPRAP08240 638 aaKnown RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 PLEKP08567 350 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 UBL4AP11441 157 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 PSG1P11464 419 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 PECAM1P16284 738 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 ZNF18P17022 549 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 AGAP20933 346 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 WARSP23381 471 aaKnown RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 TBXAS1P24557 533 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 ACVR2AP27037 513 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 EEF1DP29692 281 aaKnown RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 SLC11A2P49281 568 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 NUMBP49757 651 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 STK19P49842 368 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 SGSHP51688 502 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 PFN3P60673 137 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 RBP5P82980 135 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 COG7P83436 770 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 ZNF91Q05481 1191 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 RPS6KA2Q15349 733 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 CALCRLQ16602 461 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 CLPPQ16740 277 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 FAM69AQ5T7M9 428 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 VWA5B1Q5TIE3 1220 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 CES4AQ5XG92 561 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 SLC22A25Q6T423 547 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 CYP20A1Q6UW02 462 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 NCCRP1Q6ZVX7 275 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 SLFN11Q7Z7L1 901 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 RASGRP3Q8IV61 690 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 CSGALNACT2Q8N6G5 542 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 LRRC52Q8N7C0 313 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 KDM1BQ8NB78 822 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 TMEM161BQ8NDZ6 487 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 OR4D9Q8NGE8 314 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 NFKBIDQ8NI38 313 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 ZNF398Q8TD17 642 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 CT55Q8WUE5 264 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 WDR60Q8WVS4 1066 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 ZFPM2Q8WW38 1151 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 RUFY2Q8WXA3 655 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 OR8D1Q8WZ84 308 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 TSACCQ96A04 125 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 MRPL45Q9BRJ2 306 aaKnown RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 MED10Q9BTT4 135 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 DPCDQ9BVM2 203 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 C19orf24Q9BVV8 132 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 SLC17A9Q9BYT1 436 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 MUC13Q9H3R2 512 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 FBXO44Q9H4M3 255 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 DMAP1Q9NPF5 467 aaPredicted RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 FBXO8Q9NRD0 319 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 COMMD8Q9NX08 183 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 C5AR2Q9P296 337 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 INTS6Q9UL03 887 aaKnown RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 NDRG4Q9ULP0 352 aaKnown RBP4.2□□□□□ -1.74
LINC00540-201ENST00000611481 HSF4Q9ULV5 492 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 NME7Q9Y5B8 376 aa4.2□□□□□ -1.74
LINC00540-201ENST00000611481 NCOA6Q14686 2063 aaPredicted RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 A0A0U1RQS6 177 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 LOC102723971A0A1B0GUV8 181 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 OR2W5A6NFC9 320 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 RAB27BO00194 218 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 TSPAN4O14817 238 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 PCDH17O14917 1159 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 TBL1XO60907 577 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 RNF8O76064 485 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 KIAA0754O94854 1291 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 GOSR1O95249 250 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 OR52Z1P0C646 297 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 DESP17661 470 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 TPH1P17752 444 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 FPR3P25089 353 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 MT3P25713 68 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 SERPINA4P29622 427 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 CDC25AP30304 524 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 GRK5P34947 590 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 GNL1P36915 607 aaPredicted RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 HNF4AP41235 474 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 CA7P43166 264 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 ME1P48163 572 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 BLKP51451 505 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 MAZP56270 477 aaKnown RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 RPS3AP61247 264 aaKnown RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 RPS21P63220 83 aaKnown RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 ECT2LQ008S8 904 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 UBXN1Q04323 297 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms