RNA–Protein interactions for RNA: ENST00000577246.5

COPS3-214, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 639 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-214ENST00000577246 PKP4Q99569 1192 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 NPAS2Q99743 824 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 FRMD8P1Q9BZ68 369 aaPredicted RBP12.56□□□□□ -0.4
COPS3-214ENST00000577246 IL22Q9GZX6 179 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 CDCP1Q9H5V8 836 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 SYNPO2LQ9H987 977 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 CHRAC1Q9NRG0 131 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 RAB6BQ9NRW1 208 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 TMEM184CQ9NVA4 438 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 AMFRQ9UKV5 643 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 VPS9D1Q9Y2B5 631 aa12.56□□□□□ -0.4
COPS3-214ENST00000577246 FAM90A27PA6NNH2 459 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 E7ENX8 843 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 HOXD4P09016 255 aaPredicted RBP12.55□□□□□ -0.4
COPS3-214ENST00000577246 DRD2P14416 443 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 HOXB4P17483 251 aaPredicted RBP12.55□□□□□ -0.4
COPS3-214ENST00000577246 IL1RNP18510 177 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 JAK1P23458 1154 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 FMO4P31512 558 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 PTGER1P34995 402 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 GRIA1P42261 906 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 OR4D2P58180 307 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 SLC26A5P58743 744 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 MPP1Q00013 466 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 MEF2AQ02078 507 aaPredicted RBP12.55□□□□□ -0.4
COPS3-214ENST00000577246 TAP2Q03519 686 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 KLHL38Q2WGJ6 581 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 CTSL3PQ5NE16 218 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 TMEM214Q6NUQ4 689 aaKnown RBP12.55□□□□□ -0.4
COPS3-214ENST00000577246 ARHGAP11AQ6P4F7 1023 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 ACAD11Q709F0 780 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 PEX26Q7Z412 305 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 TGIF2LYQ8IUE0 185 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 SYCE1Q8N0S2 351 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 CCDC89Q8N998 374 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 ZNF480Q8WV37 535 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 CXXC4Q9H2H0 198 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 TRIM45Q9H8W5 580 aaPredicted RBP12.55□□□□□ -0.4
COPS3-214ENST00000577246 NPDC1Q9NQX5 325 aaPredicted RBP12.55□□□□□ -0.4
COPS3-214ENST00000577246 TREX1Q9NSU2 369 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 ABCF3Q9NUQ8 709 aa12.55□□□□□ -0.4
COPS3-214ENST00000577246 A0A1B0GTH9 108 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 H7BY64 318 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 SGK494L7N484 410 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 MAN1A2O60476 641 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 CDC40O60508 579 aaKnown RBP eCLIP12.54□□□□□ -0.4
COPS3-214ENST00000577246 NIPSNAP2O75323 286 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 SYF2O95926 243 aaKnown RBP12.54□□□□□ -0.4
COPS3-214ENST00000577246 SLC35G6P0C7Q6 338 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 TPP2P29144 1249 aaPredicted RBP12.54□□□□□ -0.4
COPS3-214ENST00000577246 TRHRP34981 398 aaPredicted RBP12.54□□□□□ -0.4
COPS3-214ENST00000577246 GRK3P35626 688 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 HLCSP50747 726 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 IST1P53990 364 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 SESN2P58004 480 aaPredicted RBP12.54□□□□□ -0.4
COPS3-214ENST00000577246 RHAGQ02094 409 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 TFF3Q07654 80 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 TBX2Q13207 712 aaPredicted RBP12.54□□□□□ -0.4
COPS3-214ENST00000577246 TYSND1Q2T9J0 566 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 RNFT1Q5M7Z0 435 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 NIPAL1Q6NVV3 410 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 PAOXQ6QHF9 649 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 PRSS41Q7RTY9 318 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 FGD2Q7Z6J4 655 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 PLD3Q8IV08 490 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 AMER2Q8N7J2 671 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 LRRC57Q8N9N7 239 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 PPFIBP2Q8ND30 876 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 ELP5Q8TE02 316 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 LPGAT1Q92604 370 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 PRAP1Q96NZ9 151 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 PCBD2Q9H0N5 130 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 CCDC177Q9NQR7 707 aaPredicted RBP12.54□□□□□ -0.4
COPS3-214ENST00000577246 BFARQ9NZS9 450 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 PAK5Q9P286 719 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 RNF6Q9Y252 685 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 DRG1Q9Y295 367 aaKnown RBP12.54□□□□□ -0.4
COPS3-214ENST00000577246 SLC22A7Q9Y694 548 aa12.54□□□□□ -0.4
COPS3-214ENST00000577246 NKX2-6A6NCS4 301 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 ZNHIT1O43257 154 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 ZBTB14O43829 449 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 RDH16O75452 317 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 CDC123O75794 336 aaPredicted RBP12.53□□□□□ -0.4
COPS3-214ENST00000577246 TOXO94900 526 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 VAPBO95292 243 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 TFEBP19484 476 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 KLK2P20151 261 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 NPY2RP49146 381 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 MEOX1P50221 254 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 ST13P50502 369 aaKnown RBP12.53□□□□□ -0.4
COPS3-214ENST00000577246 ITGA8P53708 1063 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 HERC3Q15034 1050 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 ACSBG2Q5FVE4 666 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 VN1R4Q7Z5H5 301 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 REXO1L1PQ8IX06 675 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 TC2NQ8N9U0 490 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 ZCCHC10Q8TBK6 192 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 FAM136AQ96C01 138 aa12.53□□□□□ -0.4
COPS3-214ENST00000577246 EIF2B3Q9NR50 452 aaKnown RBP12.53□□□□□ -0.4
COPS3-214ENST00000577246 KLHL42Q9P2K6 505 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms