RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 XPO4Q9C0E2 1151 aaKnown RBP4.49□□□□□ -1.69
NUP88-213ENST00000576862 MTMR12Q9C0I1 747 aa4.49□□□□□ -1.69
NUP88-213ENST00000576862 TBC1D7Q9P0N9 293 aa4.49□□□□□ -1.69
NUP88-213ENST00000576862 NEXMIFQ5QGS0 1516 aa4.49□□□□□ -1.69
NUP88-213ENST00000576862 PIK3C2BO00750 1634 aa4.49□□□□□ -1.69
NUP88-213ENST00000576862 A2ML1A8K2U0 1454 aa4.49□□□□□ -1.69
NUP88-213ENST00000576862 CENPJQ9HC77 1338 aaPredicted RBP4.48□□□□□ -1.69
NUP88-213ENST00000576862 MROH2AA6NES4 1674 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 SNURFLB1AK76 121 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 CCL24O00175 119 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 PLOD3O60568 738 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 MAGEC1O60732 1142 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 CRLF1O75462 422 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 GGPS1O95749 300 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 GSRP00390 522 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 EEF1B2P24534 225 aaKnown RBP4.48□□□□□ -1.69
NUP88-213ENST00000576862 MMP12P39900 470 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 LBX1P52954 281 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 KRTAP10-5P60370 271 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 RASGEF1BQ0VAM2 473 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 SMC1AQ14683 1233 aaKnown RBP4.48□□□□□ -1.69
NUP88-213ENST00000576862 KRT80Q6KB66 452 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 LEKR1Q6ZMV7 388 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 TLK2Q86UE8 772 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 PROX1Q92786 737 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 SLCO2A1Q92959 643 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 RMDN1Q96DB5 314 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 CFAP53Q96M91 514 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 ZNF558Q96NG5 402 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 SPAG5Q96R06 1193 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 VGLL1Q99990 258 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 PANK2Q9BZ23 570 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 PRRG4Q9BZD6 226 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 FZD8Q9H461 694 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 PANK3Q9H999 370 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 PANK4Q9NVE7 773 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 C19orf25Q9UFG5 118 aaPredicted RBP4.48□□□□□ -1.69
NUP88-213ENST00000576862 TNRQ92752 1358 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 KIF13AQ9H1H9 1805 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 SPATA31D1Q6ZQQ2 1576 aa4.48□□□□□ -1.69
NUP88-213ENST00000576862 ZC3H13Q5T200 1668 aaKnown RBP4.48□□□□□ -1.69
NUP88-213ENST00000576862 RIMS2Q9UQ26 1411 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 ASXL1Q8IXJ9 1541 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 C2CD4DB7Z1M9 353 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 KRT5P13647 590 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 GUCY2DQ02846 1103 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 TRAP1Q12931 704 aaKnown RBP4.47□□□□□ -1.69
NUP88-213ENST00000576862 TCP11X2Q5H9J9 407 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 BSPRYQ5W0U4 402 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 KLHL10Q6JEL2 608 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 SNX32Q86XE0 403 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 ERC1Q8IUD2 1116 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 SLC37A3Q8NCC5 494 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 CCDC191Q8NCU4 936 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 OR7A2PQ8NGA2 310 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 ZNRF4Q8WWF5 429 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 KCNE4Q8WWG9 221 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 NSMCE3Q96MG7 304 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 PKP2Q99959 881 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 CABLES2Q9BTV7 478 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 FAM49AQ9H0Q0 323 aaPredicted RBP4.47□□□□□ -1.69
NUP88-213ENST00000576862 RABEP2Q9H5N1 569 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 GSN-AS1Q9NRJ2 163 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.47□□□□□ -1.69
NUP88-213ENST00000576862 PAK5Q9P286 719 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.47□□□□□ -1.69
NUP88-213ENST00000576862 XPO7Q9UIA9 1087 aaKnown RBP4.47□□□□□ -1.69
NUP88-213ENST00000576862 CHKBQ9Y259 395 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 CCL27Q9Y4X3 112 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 PARD3Q8TEW0 1356 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 TSPOAP1O95153 1857 aa4.47□□□□□ -1.69
NUP88-213ENST00000576862 SETBP1Q9Y6X0 1596 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 PTPRMP28827 1452 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 KTN1Q86UP2 1357 aaKnown RBP4.46□□□□□ -1.7
NUP88-213ENST00000576862 TMEM2Q9UHN6 1383 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 TRAV24A0A0B4J272 114 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 C19orf81C9J6K1 198 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 CPLX1O14810 134 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 SNX3O60493 162 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 BAG3O95817 575 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 CASQ1P31415 396 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 CTNNA1P35221 906 aaKnown RBP4.46□□□□□ -1.7
NUP88-213ENST00000576862 DNA2P51530 1060 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 TRIM29Q14134 588 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 EFTUD2Q15029 972 aaKnown RBP eCLIP4.46□□□□□ -1.7
NUP88-213ENST00000576862 E2F5Q15329 346 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 ZKSCAN8Q15776 578 aaPredicted RBP4.46□□□□□ -1.7
NUP88-213ENST00000576862 FASTKD1Q53R41 847 aaKnown RBP4.46□□□□□ -1.7
NUP88-213ENST00000576862 KRBOX4Q5JUW0 171 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 STXBP4Q6ZWJ1 553 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 MFN1Q8IWA4 741 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 CAMKVQ8NCB2 501 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 USP28Q96RU2 1077 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 LPAR4Q99677 370 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 NKX3-1Q99801 234 aaPredicted RBP4.46□□□□□ -1.7
NUP88-213ENST00000576862 RBM4BQ9BQ04 359 aaKnown RBP4.46□□□□□ -1.7
NUP88-213ENST00000576862 DGCR6LQ9BY27 220 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 MRPL9Q9BYD2 267 aaKnown RBP4.46□□□□□ -1.7
NUP88-213ENST00000576862 TXNDC16Q9P2K2 825 aa4.46□□□□□ -1.7
NUP88-213ENST00000576862 TMEM131LA2VDJ0 1609 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms