RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 FITM1A5D6W6 292 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 ANKDD1BA6NHY2 528 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 UBFD1O14562 309 aaKnown RBP16.31■□□□□ 0.2
NUP88-210ENST00000574867 DXOO77932 396 aaKnown RBP16.31■□□□□ 0.2
NUP88-210ENST00000574867 OR4F21O95013 312 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 TNFSF15O95150 251 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 EMP3P54852 163 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 RTP5Q14D33 572 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 ZRSR2Q15696 482 aaKnown RBP16.31■□□□□ 0.2
NUP88-210ENST00000574867 WASHC2DQ5SRD0 308 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 MANEAQ5SRI9 462 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 YOD1Q5VVQ6 348 aaPredicted RBP16.31■□□□□ 0.2
NUP88-210ENST00000574867 ATG16L1Q676U5 607 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 SLC13A3Q8WWT9 602 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 TM4SF19Q96DZ7 209 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 SYNPO2LQ9H987 977 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 SNX6Q9UNH7 406 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 SRPK3Q9UPE1 567 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 PCDHB3Q9Y5E6 796 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 SPTBN2O15020 2390 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 NDUFS4O43181 175 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 CLEC3AO75596 197 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 EIF2S1P05198 315 aaKnown RBP16.31■□□□□ 0.2
NUP88-210ENST00000574867 RBMS1P29558 406 aaKnown RBP16.31■□□□□ 0.2
NUP88-210ENST00000574867 RGS1Q08116 209 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 ARL13AQ5H913 290 aaPredicted RBP16.31■□□□□ 0.2
NUP88-210ENST00000574867 TTC19Q6DKK2 380 aaPredicted RBP16.31■□□□□ 0.2
NUP88-210ENST00000574867 CUZD1Q86UP6 607 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 TMEM126BQ8IUX1 230 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 CDYL2Q8N8U2 506 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 NT5CQ8TCD5 201 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 USP7Q93009 1102 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 CTRCQ99895 268 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 PCDHGA7Q9Y5G6 932 aa16.31■□□□□ 0.2
NUP88-210ENST00000574867 CACNA1AO00555 2505 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 KLF11O14901 512 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 CRCPO75575 148 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 SCRG1O75711 98 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 HSPA4LO95757 839 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 CAPN1P07384 714 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 PCNAP12004 261 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 HMOX2P30519 316 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 PIK3CBP42338 1070 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 CCR10P46092 362 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 ABCE1P61221 599 aaKnown RBP16.3■□□□□ 0.2
NUP88-210ENST00000574867 IFT88Q13099 833 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 STX3Q13277 289 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 PRTGQ2VWP7 1150 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 GARNL3Q5VVW2 1013 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 FRG2Q64ET8 278 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 ERMP1Q7Z2K6 904 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 KIRREL3Q8IZU9 778 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 SLC46A1Q96NT5 459 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 FRG2BQ96QU4 278 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 SPRTNQ9H040 489 aaPredicted RBP16.3■□□□□ 0.2
NUP88-210ENST00000574867 ELOVL6Q9H5J4 265 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 MANSC1Q9H8J5 431 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 B3GALT1Q9Y5Z6 326 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 NVLO15381 856 aaKnown RBP16.3■□□□□ 0.2
NUP88-210ENST00000574867 P2RX6O15547 441 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 KRT6AP02538 564 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 KRT6BP04259 564 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 CHRNGP07510 517 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 SERPINA6P08185 405 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 HBQ1P09105 142 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 KRT6CP48668 564 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 ARSFP54793 590 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 CYP4F2P78329 520 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 SHC2P98077 582 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 ZNF33BQ06732 778 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 FAM214AQ32MH5 1076 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 PWWP2BQ6NUJ5 590 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 WDR20Q8TBZ3 569 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 METTL6Q8TCB7 284 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 CREB3L4Q8TEY5 395 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 PMEPA1Q969W9 287 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 NDC1Q9BTX1 674 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 PPT2Q9UMR5 302 aa16.3■□□□□ 0.2
NUP88-210ENST00000574867 RUVBL1Q9Y265 456 aaKnown RBP16.3■□□□□ 0.2
NUP88-210ENST00000574867 URADA6NGE7 173 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 C9orf172C9J069 976 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 FFAR3O14843 346 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 GPR42O15529 346 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 CPNE3O75131 537 aaKnown RBP16.29■□□□□ 0.2
NUP88-210ENST00000574867 SERPIND1P05546 499 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 CTSBP07858 339 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 SPINK2P20155 84 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 SLC1A6P48664 564 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 BST1Q10588 318 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 HKDC1Q2TB90 917 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 VN1R5Q7Z5H4 357 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 HUS1BQ8NHY5 278 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 ZNF473Q8WTR7 871 aaKnown RBP16.29■□□□□ 0.2
NUP88-210ENST00000574867 CCT6BQ92526 530 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 PRM3Q9NNZ6 103 aa16.29■□□□□ 0.2
NUP88-210ENST00000574867 HYKKA2RU49 373 aa16.28■□□□□ 0.2
NUP88-210ENST00000574867 CDRT15L2A8MXV6 281 aa16.28■□□□□ 0.2
NUP88-210ENST00000574867 FOXE1O00358 373 aaPredicted RBP16.28■□□□□ 0.2
NUP88-210ENST00000574867 ZNF749O43361 778 aa16.28■□□□□ 0.2
NUP88-210ENST00000574867 UROSP10746 265 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms