RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 SOX17Q9H6I2 414 aaPredicted RBP4.16□□□□□ -1.74
SNX1-205ENST00000559339 ACSS3Q9H6R3 686 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 MKKSQ9NPJ1 570 aaPredicted RBP4.16□□□□□ -1.74
SNX1-205ENST00000559339 NPDC1Q9NQX5 325 aaPredicted RBP4.16□□□□□ -1.74
SNX1-205ENST00000559339 SMYD2Q9NRG4 433 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 ZDHHC18Q9NUE0 388 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 CUEDC1Q9NWM3 386 aaPredicted RBP4.16□□□□□ -1.74
SNX1-205ENST00000559339 P4HTMQ9NXG6 502 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 GPRC5BQ9NZH0 403 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 CTSFQ9UBX1 484 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 C19orf25Q9UFG5 118 aaPredicted RBP4.16□□□□□ -1.74
SNX1-205ENST00000559339 DMGDHQ9UI17 866 aaKnown RBP4.16□□□□□ -1.74
SNX1-205ENST00000559339 ZFP69BQ9UJL9 534 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 C3orf18Q9UK00 162 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 MKL2Q9ULH7 1088 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 TP53TG5Q9Y2B4 290 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 ZNF451Q9Y4E5 1061 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 ANGPTL3Q9Y5C1 460 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 SLC22A7Q9Y694 548 aa4.16□□□□□ -1.74
SNX1-205ENST00000559339 KALRNO60229 2985 aa4.15□□□□□ -1.74
SNX1-205ENST00000559339 FASNP49327 2511 aaKnown RBP4.15□□□□□ -1.74
SNX1-205ENST00000559339 IGLV3-12A0A075B6K2 115 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 A0A096LPK6 155 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 A0A0A6YYC8 382 aaPredicted RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 NSG1A0A0A6YYJ2 146 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 EXOC1LA0A1B0GW35 172 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 ANKDD1BA6NHY2 528 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 VSTM2BA6NLU5 285 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 IDSB3KWA1 339 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 SUPT3HB4E1H0 165 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 I3L1I5 382 aaPredicted RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 J3QKU1 62 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 PSMD12O00232 456 aaPredicted RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 MAP2K7O14733 419 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 SUV39H1O43463 412 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 FOXS1O43638 330 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 CCNT2O60583 730 aaKnown RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 DPM1O60762 260 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 KERAO60938 352 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 SUPT3HO75486 399 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 FAM155BO75949 473 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 KLHL2O95198 593 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 SERPINA6P08185 405 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 RBP1P09455 135 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 RHOXF2BP0C7M4 288 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 SLC35E2BP0CK96 405 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 C8orf89P0DMQ9 161 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 C1GALT1C1LP0DN25 315 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 MYBL2P10244 700 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 GFAPP14136 432 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 EPB42P16452 691 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 IL1RNP18510 177 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 TFEBP19484 476 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 ITGA3P26006 1051 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 VARSP26640 1264 aaKnown RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 GGT5P36269 586 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 CASRP41180 1078 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 BCL6P41182 706 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 GDF5P43026 501 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 XCR1P46094 333 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 GCGRP47871 477 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 SCTRP47872 440 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 AGTR2P50052 363 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 SERPINB8P50452 374 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 EMP2P54851 167 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 MEF2AQ02078 507 aaPredicted RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 TGM3Q08188 693 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 CDC16Q13042 620 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 CHAF1BQ13112 559 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 LAPTM5Q13571 262 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 RCN2Q14257 317 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 MYBPC3Q14896 1274 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 EFTUD2Q15029 972 aaKnown RBP eCLIP4.15□□□□□ -1.75
SNX1-205ENST00000559339 PDK4Q16654 411 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 TSNAXIP1Q2TAA8 658 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 TUBB8Q3ZCM7 444 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 DEFB134Q4QY38 66 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 VWA2Q5GFL6 755 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 XKR6Q5GH73 641 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 CATSPEREQ5SY80 951 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 VWA5B1Q5TIE3 1220 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 AGAP7PQ5VUJ5 663 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 CPZQ66K79 652 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 ATG9BQ674R7 924 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 NXPE4Q6UWF7 544 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 TMIGD1Q6UXZ0 262 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 TRMT10CQ7L0Y3 403 aaKnown RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 NDUFAF7Q7L592 441 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 LRRC70Q7Z2Q7 622 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 CMC1Q7Z7K0 106 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 ISCA2Q86U28 154 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 PTRH1Q86Y79 214 aaKnown RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 PRSS58Q8IYP2 241 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 GALNT16Q8N428 558 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 ZADH2Q8N4Q0 377 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 EIF1ADQ8N9N8 165 aaKnown RBP4.15□□□□□ -1.75
SNX1-205ENST00000559339 SNX31Q8N9S9 440 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 PDPRQ8NCN5 879 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 ZNF740Q8NDX6 193 aa4.15□□□□□ -1.75
SNX1-205ENST00000559339 SRFBP1Q8NEF9 429 aaKnown RBP4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms