RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 CRNNQ9UBG3 495 aaPredicted RBP11.41□□□□□ -0.58
VIPAS39-211ENST00000557658 VPS4AQ9UN37 437 aa11.41□□□□□ -0.58
VIPAS39-211ENST00000557658 TMEM98Q9Y2Y6 226 aa11.41□□□□□ -0.58
VIPAS39-211ENST00000557658 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 ZNF840PA6NDX5 716 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 LAMP1P11279 417 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 JUPP14923 745 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 GABRB1P18505 474 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 PCGF2P35227 344 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 TIE1P35590 1138 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 HNF1BP35680 557 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 SELENOWP63302 87 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 TEAD4Q15561 434 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 ZXDCQ2QGD7 858 aaPredicted RBP11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 CYP4Z2PQ8N1L4 340 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 CBARPQ8N350 705 aaPredicted RBP11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 C11orf65Q8NCR3 313 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 VPS37AQ8NEZ2 397 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 FLCNQ8NFG4 579 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 LILRB4Q8NHJ6 448 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 SH3KBP1Q96B97 665 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 TMCO6Q96DC7 493 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 SLC30A2Q9BRI3 323 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 CHST8Q9H2A9 424 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 TMEM184CQ9NVA4 438 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 NDUFAF4Q9P032 175 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 RUVBL1Q9Y265 456 aaKnown RBP11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 SLC22A14Q9Y267 594 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 GRIP1Q9Y3R0 1128 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 TBL1XO60907 577 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 ASGR1P07306 291 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 CCR7P32248 378 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 HTR3AP46098 478 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 C21orf58P58505 322 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 SPIBQ01892 262 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 CHIT1Q13231 466 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 LGI4Q8N135 537 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 ST13P5Q8NFI4 369 aaPredicted RBP11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 OR6F1Q8NGZ6 308 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 OVCA2Q8WZ82 227 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 SNX18Q96RF0 628 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 CCM2Q9BSQ5 444 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 DDX28Q9NUL7 540 aaKnown RBP11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 MS4A12Q9NXJ0 267 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 ZDHHC3Q9NYG2 299 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 VPS29Q9UBQ0 182 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 BTNL2Q9UIR0 455 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 TRAPPC4Q9Y296 219 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 BTBD3Q9Y2F9 522 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 N6AMT1Q9Y5N5 214 aa11.4□□□□□ -0.58
VIPAS39-211ENST00000557658 A0A075B6Q4 140 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 EFCAB10A6NFE3 127 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 UPK3BL1B0FP48 263 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 UPK3BL2E5RIL1 263 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 H7C4K7 107 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 YY2O15391 372 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 PRAMEF4O60810 478 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ITPKAP23677 461 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 CRISP3P54108 245 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 CDH12P55289 794 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ZNF33BQ06732 778 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ACSM2AQ08AH3 577 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 STARD3Q14849 445 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 RGNQ15493 299 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 CDKN3Q16667 212 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 MICAQ29983 383 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 TRIM71Q2Q1W2 868 aaKnown RBP11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 HKDC1Q2TB90 917 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ATAD3CQ5T2N8 411 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 PRAMEF9Q5VWM5 478 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ACSM2BQ68CK6 577 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 TPGS1Q6ZTW0 290 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 TSEN54Q7Z6J9 526 aaKnown RBP11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 UBQLNLQ8IYU4 475 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 RNF175Q8N4F7 328 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 B3GNT7Q8NFL0 401 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 SETD6Q8TBK2 473 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 CHTF18Q8WVB6 975 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 MAL2Q969L2 176 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 TP53INP1Q96A56 240 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 COPS8Q99627 209 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 SDHCQ99643 169 aaPredicted RBP11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ZNF556Q9HAH1 456 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 NMRK2Q9NPI5 230 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 RLIMQ9NVW2 624 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 SNX8Q9Y5X2 465 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ANKRD34BA5PLL1 514 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 TMEM229AB2RXF0 380 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 CCRL2O00421 344 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 SCAMP2O15127 329 aaKnown RBP11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 SSX4O60224 188 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 MFN2O95140 757 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ABCB1P08183 1280 aaPredicted RBP11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 CYP2A7P20853 494 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 CD72P21854 359 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 FKBP1BP68106 108 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 ZXDBP98169 803 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 HSPA14Q0VDF9 509 aa11.39□□□□□ -0.59
VIPAS39-211ENST00000557658 DMC1Q14565 340 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms