RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 TRADDQ15628 312 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ETFDHQ16134 617 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ZC2HC1CQ53FD0 456 aaPredicted RBP2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF542PQ5EBM4 170 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ARMCX4Q5H9R4 360 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 LDLRAP1Q5SW96 308 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 IRAK1BP1Q5VVH5 260 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 SLC25A24Q6NUK1 477 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 AFTPHQ6ULP2 937 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF554Q86TJ5 538 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 SYVN1Q86TM6 617 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 SFR1Q86XK3 245 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 PRIMA1Q86XR5 153 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 EGFL6Q8IUX8 553 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 DCP1BQ8IZD4 617 aaKnown RBP2.89□□□□□ -1.95
TRAV28-201ENST00000557548 DNAJC22Q8N4W6 341 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF441Q8N8Z8 693 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 LRTM2Q8N967 370 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 SLC24A4Q8NFF2 622 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 OR56B1Q8NGI3 324 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 HAS2Q92819 552 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ULK4Q96C45 1275 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 LGALS12Q96DT0 336 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 C14orf79Q96F83 325 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF385AQ96PM9 386 aaKnown RBP2.89□□□□□ -1.95
TRAV28-201ENST00000557548 PRMT1Q99873 361 aaKnown RBP2.89□□□□□ -1.95
TRAV28-201ENST00000557548 THUMPD2Q9BTF0 503 aaKnown RBP2.89□□□□□ -1.95
TRAV28-201ENST00000557548 POLR3CQ9BUI4 534 aaPredicted RBP2.89□□□□□ -1.95
TRAV28-201ENST00000557548 WWTR1Q9GZV5 400 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 SIRPDQ9H106 197 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 C5orf66Q9H5L9 145 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 DCLRE1BQ9H816 532 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 C10orf88Q9H8K7 445 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 COQ10BQ9H8M1 238 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 UBTD1Q9HAC8 227 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 TCF7L2Q9NQB0 619 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 PANK4Q9NVE7 773 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 AATFQ9NY61 560 aaKnown RBP eCLIP2.89□□□□□ -1.95
TRAV28-201ENST00000557548 CLIP2Q9UDT6 1046 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 MALT1Q9UDY8 824 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 FAM153AQ9UHL3 310 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 PSORS1C1Q9UIG5 152 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 SLC7A7Q9UM01 511 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF804BA4D1E1 1349 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 UBE4BO95155 1302 aa2.89□□□□□ -1.95
TRAV28-201ENST00000557548 WDR33Q9C0J8 1336 aaKnown RBP2.89□□□□□ -1.95
TRAV28-201ENST00000557548 KIAA1217Q5T5P2 1943 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 A0A0U1RRA0 63 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CCDC162PA2VCL2 907 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CTAGE9A4FU28 777 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 ANTXRLA6NF34 631 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 C2orf81A6NN90 581 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 HNRNPCL2B2RXH8 293 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 F8WDY8 70 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF197O14709 1029 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CHUKO15111 745 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 SCGB2A1O75556 95 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 APOHP02749 345 aaPredicted RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 HOXC6P09630 235 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CCDC159P0C7I6 412 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CTAGE8P0CG41 777 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 TPBGLP0DKB5 382 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 HSPA5P11021 654 aaKnown RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 DARSP14868 501 aaKnown RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 B4GALT1P15291 398 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 EZRP15311 586 aaKnown RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CA4P22748 312 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 MARCKSP29966 332 aaPredicted RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 PRDX6P30041 224 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 PKLRP30613 574 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CSTF2P33240 577 aaKnown RBP eCLIP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 MDH1P40925 334 aaKnown RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 NSFP46459 744 aaKnown RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 GLIPR1P48060 266 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 SLC6A12P48065 614 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 IFNAR2P48551 515 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 TNFSF10P50591 281 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 ARFIP1P53367 373 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 RPP38P78345 283 aaKnown RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 RPL24P83731 157 aaKnown RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 PMP22Q01453 160 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 ELP6Q0PNE2 266 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 TRAF2Q12933 501 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 ZBTB17Q13105 803 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 SCGB2A2Q13296 93 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 TMED1Q13445 227 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CDH18Q13634 790 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 HERC3Q15034 1050 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 DCAF10Q5QP82 559 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 TEX35Q5T0J7 233 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CES4AQ5XG92 561 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 KDELC1Q6UW63 502 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 ARMCX2Q7L311 632 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 ZER1Q7Z7L7 766 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 AMZ2Q86W34 360 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 CTAGE4Q8IX94 777 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 MUC20Q8N307 709 aaPredicted RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 SIDT2Q8NBJ9 832 aaKnown RBP2.88□□□□□ -1.95
TRAV28-201ENST00000557548 LEMD2Q8NC56 503 aa2.88□□□□□ -1.95
TRAV28-201ENST00000557548 KCNH5Q8NCM2 988 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms