RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CHMP1AQ9HD42 196 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 CDH10Q9Y6N8 788 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 FAM234BA2RU67 622 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 ANKDD1BA6NHY2 528 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 LILRB5O75023 590 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 ENDOD1O94919 500 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 ZNF8P17098 575 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 PFKLP17858 780 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 PAICSP22234 425 aaKnown RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 MGAT1P26572 445 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 PTBP1P26599 531 aaKnown RBP eCLIP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 STOMP27105 288 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 MAN2A2P49641 1150 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 BCAR1P56945 870 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 GABREP78334 506 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 CAMK2DQ13557 499 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 CDH18Q13634 790 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 SNAPC1Q16533 368 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 SPANXN3Q5MJ09 141 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 AADACL4Q5VUY2 407 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 POMZP3Q6PJE2 187 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 C3P1Q6ZMU1 363 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 GALNT5Q7Z7M9 940 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 DENND1CQ8IV53 801 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 UXS1Q8NBZ7 420 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 BSNDQ8WZ55 320 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 NR4A3Q92570 626 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 LURAP1Q96LR2 239 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 TMEM74Q96NL1 305 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 GPR78Q96P69 363 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 ERMAPQ96PL5 475 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 MRPL57Q9BQC6 102 aaKnown RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 MXRA8Q9BRK3 442 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 DDX31Q9H8H2 851 aaKnown RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 SLC28A3Q9HAS3 691 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 ASH2LQ9UBL3 628 aa13.37□□□□□ -0.27
SHMT2-226ENST00000556825 NDRG2Q9UN36 371 aaKnown RBP13.37□□□□□ -0.27
SHMT2-226ENST00000556825 TMEM238LA0A1B0GVL6 79 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 POM121BA6NF01 834 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 KPNA3O00505 521 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PPM1DO15297 605 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PPP1R11O60927 126 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 FOSP01100 380 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 POLBP06746 335 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 NFICP08651 508 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 MAPTP10636 758 aaKnown RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 C4BPBP20851 252 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 ATP5A1P25705 553 aaKnown RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 XKP51811 444 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 RPS7P62081 194 aaKnown RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 EMX2Q04743 252 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 KYAT1Q16773 422 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 TRIQKQ629K1 86 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 HEATR6Q6AI08 1181 aaKnown RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 JADE1Q6IE81 842 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 DTWD1Q8N5C7 304 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 AKR7LQ8NHP1 331 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 TSPEARQ8WU66 669 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 DNASE1L2Q92874 299 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 DIRAS2Q96HU8 199 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 CYP2S1Q96SQ9 504 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 ABCB9Q9NP78 766 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 TNFRSF12AQ9NP84 129 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 XPR1Q9UBH6 696 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PSORS1C1Q9UIG5 152 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 GABRQQ9UN88 632 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PCDHGB7Q9Y5F8 929 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PTPRJQ12913 1337 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PRAMEF33A0A0G2JMD5 474 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PRAMEF10O60809 474 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 MT-CYBP00156 380 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 HAPLN1P10915 354 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PVALBP20472 110 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 UBA1P22314 1058 aaKnown RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 DNASE1P24855 282 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 CLCN3P51790 818 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 SESN2P58004 480 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 CRYZQ08257 329 aaKnown RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PPP1R8Q12972 351 aaKnown RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PTPRCAPQ14761 206 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 CRY2Q49AN0 593 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 C9orf152Q5JTZ5 239 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 FRMPD2BQ6IN97 320 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 ESRP1Q6NXG1 681 aaKnown RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 CUZD1Q86UP6 607 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 KIAA0319LQ8IZA0 1049 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 C12orf29Q8N999 325 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 DNAAF3Q8N9W5 541 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 IPMKQ8NFU5 416 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PHOSPHO1Q8TCT1 267 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 C2CD4CQ8TF44 421 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 CRELD1Q96HD1 420 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 AGAP2Q99490 1192 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 VRK1Q99986 396 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 LRRC3Q9BY71 257 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 MCOLN1Q9GZU1 580 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 MIXL1Q9H2W2 232 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 PIF1Q9H611 641 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 GKN1Q9NS71 199 aa13.36□□□□□ -0.27
SHMT2-226ENST00000556825 C14orf105Q9NVL8 296 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms