RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RLFQ13129 1914 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3DA0A087WVF3 549 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3IA0A087WXS9 549 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3EA0A087X179 549 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3KA0A087X1G2 549 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 FEZF1A0PJY2 475 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3FA6NER0 549 aaPredicted RBP14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3LB9A6J9 549 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TFECO14948 347 aaPredicted RBP14.34□□□□□ -0.11
CUX1-215ENST00000556210 IFNA14P01570 189 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3HP0C7X1 549 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 CLCNKAP51800 687 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TIAL1Q01085 375 aaKnown RBP eCLIP14.34□□□□□ -0.11
CUX1-215ENST00000556210 PTSQ03393 145 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3GQ6DHY5 549 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3CQ6IPX1 549 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TBC1D3Q8IZP1 549 aaPredicted RBP14.34□□□□□ -0.11
CUX1-215ENST00000556210 ZNF740Q8NDX6 193 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TMEM203Q969S6 136 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 REPS1Q96D71 796 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 SEC14L3Q9UDX4 400 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 SOCS5O75159 536 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 C7P10643 843 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 FSHRP23945 695 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 MRPL58Q14197 206 aaKnown RBP14.34□□□□□ -0.11
CUX1-215ENST00000556210 COLEC12Q5KU26 742 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 TRAF7Q6Q0C0 670 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 METTL3Q86U44 580 aaKnown RBP14.34□□□□□ -0.11
CUX1-215ENST00000556210 MEX3DQ86XN8 651 aaKnown RBP14.34□□□□□ -0.11
CUX1-215ENST00000556210 NAGSQ8N159 534 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 SLC6A13Q9NSD5 602 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 PCDHGA4Q9Y5G9 962 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 VNN2O95498 520 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 GSTT2P0CG29 244 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 GSTT2BP0CG30 244 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 EPCAMP16422 314 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 NCS1P62166 190 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 VMACQ2NL98 169 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 SLC7A5P1Q8MH63 180 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 LGI4Q8N135 537 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 TCAIMQ8N3R3 496 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 OR14C36Q8NHC7 312 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 TP53INP1Q96A56 240 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 ZNF232Q9UNY5 417 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 CORINQ9Y5Q5 1042 aa14.33□□□□□ -0.11
CUX1-215ENST00000556210 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.33□□□□□ -0.12
CUX1-215ENST00000556210 ARHGEF33A8MVX0 844 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 BCHEP06276 602 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 HOXC8P31273 242 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 SLC13A2Q13183 592 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 ARMC4Q5T2S8 1044 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 GCNT6Q5T4J0 391 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 LHX8Q68G74 356 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 KRT78Q8N1N4 520 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 SLC39A11Q8N1S5 342 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 OR10G2Q8NGC3 310 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 WDR36Q8NI36 951 aaKnown RBP14.33□□□□□ -0.12
CUX1-215ENST00000556210 CIDECQ96AQ7 238 aaPredicted RBP14.33□□□□□ -0.12
CUX1-215ENST00000556210 MBD1Q9UIS9 605 aaPredicted RBP14.33□□□□□ -0.12
CUX1-215ENST00000556210 KLHL20Q9Y2M5 609 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 CCNDBP1O95273 360 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 CST5P28325 142 aaPredicted RBP14.33□□□□□ -0.12
CUX1-215ENST00000556210 VIPR1P32241 457 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 VEGFBP49765 207 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 SLC39A5Q6ZMH5 540 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 OR8J3Q8NGG0 315 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 FIBINQ8TAL6 211 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 HDAC2Q92769 488 aaKnown RBP14.33□□□□□ -0.12
CUX1-215ENST00000556210 GLYATL1Q969I3 302 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 KCNS3Q9BQ31 491 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 GIMAP4Q9NUV9 329 aa14.33□□□□□ -0.12
CUX1-215ENST00000556210 LAMA3Q16787 3333 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 ASPDHA6ND91 283 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 IDH3BO43837 385 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 AIREO43918 545 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 UGT2B11O75310 529 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 CCNKO75909 580 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 IGLV3-27P01718 113 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 MT-ND2P03891 347 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 PPP2R1BP30154 601 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 NKX2-5P52952 324 aaPredicted RBP14.32□□□□□ -0.12
CUX1-215ENST00000556210 CLDN8P56748 225 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SCARB2Q14108 478 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SPCS2Q15005 226 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 C9orf64Q5T6V5 341 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 ANXA8L1Q5VT79 327 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 LRRC70Q7Z2Q7 622 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 TRIM48Q8IWZ4 208 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 KCNH6Q9H252 994 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 EHD3Q9NZN3 535 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 H3BNC9 293 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 PITPNM1O00562 1244 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SLC22A1O15245 554 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SERPINB7O75635 380 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SOX6P35712 828 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 FEN1P39748 380 aaKnown RBP14.32□□□□□ -0.12
CUX1-215ENST00000556210 RAB8AP61006 207 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 TBPL1P62380 186 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 TCTN1Q2MV58 587 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 ZC3H12BQ5HYM0 836 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms