RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ACTRT2Q8TDY3 377 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 ZDHHC1Q8WTX9 485 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 LCN9Q8WX39 176 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 REPS1Q96D71 796 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 IL17FQ96PD4 163 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 EHD1Q9H4M9 534 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 TNFRSF12AQ9NP84 129 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 OR6C2Q9NZP2 312 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 ZNF624Q9P2J8 865 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-208ENST00000553868 HEY2Q9UBP5 337 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 PLAGL1Q9UM63 463 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 DNAJC15Q9Y5T4 150 aa13.9□□□□□ -0.18
SHMT2-208ENST00000553868 GOLGA8QA0A0J9YX86 632 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 GOLGA8OA6NCC3 632 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 LMO7DNF2Z398 122 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 GOLGA8NF8WBI6 632 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 EML2O95834 649 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 EPORP19235 508 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 PRDX3P30048 256 aaKnown RBP13.89□□□□□ -0.19
SHMT2-208ENST00000553868 DCTP40126 519 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 SLC19A1P41440 591 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 CASP2P42575 452 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 C1orf61Q13536 156 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 PLCL1Q15111 1095 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 HIST2H2ACQ16777 129 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-208ENST00000553868 VWA5B1Q5TIE3 1220 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 NXNQ6DKJ4 435 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 HIST2H2AA3Q6FI13 130 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 GRHL2Q6ISB3 625 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 BORAQ6PGQ7 559 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 TRPM8Q7Z2W7 1104 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 AMIGO1Q86WK6 493 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 LRRC56Q8IYG6 542 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-208ENST00000553868 SFRP1Q8N474 314 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 ZNF548Q8NEK5 533 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-208ENST00000553868 SLC5A11Q8WWX8 675 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 UBE2E3Q969T4 207 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 SLC22A18Q96BI1 424 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 PTCD3Q96EY7 689 aaKnown RBP13.89□□□□□ -0.19
SHMT2-208ENST00000553868 MAELQ96JY0 434 aaKnown RBP13.89□□□□□ -0.19
SHMT2-208ENST00000553868 CDK15Q96Q40 435 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 OR4K3Q96R72 315 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 EBF4Q9BQW3 602 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 MENTQ9BUN1 341 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 EFCAB11Q9BUY7 163 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 SLC40A1Q9NP59 571 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 ABCF3Q9NUQ8 709 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 CPNE7Q9UBL6 633 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 ZNF225Q9UK10 706 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 ICKQ9UPZ9 632 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 TIMM22Q9Y584 194 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 PCDHB11Q9Y5F2 797 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 CSNK1G3Q9Y6M4 447 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 LRP4O75096 1905 aa13.89□□□□□ -0.19
SHMT2-208ENST00000553868 EME2A4GXA9 379 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-208ENST00000553868 CCT8L1PA6NM43 557 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 B4DGG1 531 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 SLC28A1O00337 649 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 SDHDO14521 159 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 PIP5K1BO14986 540 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 ULK1O75385 1050 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 KIAA0754O94854 1291 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 SERPINA6P08185 405 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 C1GALT1C1LP0DN25 315 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 NPPBP16860 134 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 CXCR2P25025 360 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 SERPINB3P29508 390 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 MLLT10P55197 1068 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 FOXA1P55317 472 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 UBE2IP63279 158 aaKnown RBP13.88□□□□□ -0.19
SHMT2-208ENST00000553868 IRX1P78414 480 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-208ENST00000553868 ABATP80404 500 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 IFT88Q13099 833 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 BIRC2Q13490 618 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 FASTKQ14296 549 aaKnown RBP13.88□□□□□ -0.19
SHMT2-208ENST00000553868 DEFB133Q30KQ1 61 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 SLC9B1Q4ZJI4 515 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 ATG9BQ674R7 924 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 SUSD1Q6UWL2 747 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 RAB11FIP2Q7L804 512 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 TMPRSS11BQ86T26 416 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 JPH3Q8WXH2 748 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-208ENST00000553868 WDR34Q96EX3 536 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 KCNA7Q96RP8 456 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 DUSP23Q9BVJ7 150 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 SRMSQ9H3Y6 488 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 ELOVL6Q9H5J4 265 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 PELI2Q9HAT8 420 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 EVA1BQ9NVM1 165 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 PISDQ9UG56 409 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 ZFP69BQ9UJL9 534 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 ACSL6Q9UKU0 697 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 RNF11Q9Y3C5 154 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 PCDHGA11Q9Y5H2 935 aa13.88□□□□□ -0.19
SHMT2-208ENST00000553868 RP1L1Q8IWN7 2480 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-208ENST00000553868 TRBV23OR9-2A0A075B6M9 112 aa13.87□□□□□ -0.19
SHMT2-208ENST00000553868 PRAMEF33A0A0G2JMD5 474 aa13.87□□□□□ -0.19
SHMT2-208ENST00000553868 A0A1B0GTL3 188 aa13.87□□□□□ -0.19
SHMT2-208ENST00000553868 E7EQ34 232 aa13.87□□□□□ -0.19
SHMT2-208ENST00000553868 MANBAO00462 879 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms