RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 ZNF839A8K0R7 811 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 BTNL10A8MVZ5 291 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 NDC80O14777 642 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 VAPBO95292 243 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 SYF2O95926 243 aaKnown RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 TPOP07202 933 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 F7P08709 466 aaPredicted RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 ZSCAN5DPP0CG00 497 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 CD99P14209 185 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 CHRM3P20309 590 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 TPP2P29144 1249 aaPredicted RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 STIP1P31948 543 aaKnown RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 HSD17B2P37059 387 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 COILP38432 576 aaPredicted RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 RFC3P40938 356 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 SLC26A5P58743 744 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 TAS2R50P59544 299 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 ABATP80404 500 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 TFF3Q07654 80 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 ACTN3Q08043 901 aaPredicted RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 NSDHLQ15738 373 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 TYSND1Q2T9J0 566 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 THEMIS2Q5TEJ8 643 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 TMEM214Q6NUQ4 689 aaKnown RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 PDSS2Q86YH6 399 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 REXO1L1PQ8IX06 675 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 LRRC56Q8IYG6 542 aaPredicted RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 MMP21Q8N119 569 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 LGI4Q8N135 537 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 RPRMLQ8N4K4 120 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 HORMAD2Q8N7B1 307 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 KCT2Q8NC54 265 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 ACRBPQ8NEB7 543 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 GIMAP7Q8NHV1 300 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 FAM57AQ8TBR7 257 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 MCOLN3Q8TDD5 553 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 MFSD3Q96ES6 412 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 PEX11GQ96HA9 241 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 CALR3Q96L12 384 aaKnown RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 LPAR4Q99677 370 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 SLC30A3Q99726 388 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 OLFM1Q99784 485 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 TMUB1Q9BVT8 246 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 UCK2Q9BZX2 261 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 LANCL2Q9NS86 450 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 SH2B3Q9UQQ2 575 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 EPN1Q9Y6I3 576 aaPredicted RBP8.53□□□□□ -1.04
SYNE2-209ENST00000553308 ZFHX3Q15911 3703 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 ITPR3Q14573 2671 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 SCN3AQ9NY46 2000 aa8.53□□□□□ -1.04
SYNE2-209ENST00000553308 FEZF1A0PJY2 475 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 MAGEB17A8MXT2 336 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 MIF4GDA9UHW6 222 aaKnown RBP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 E5RI56 91 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 H3BMM5 538 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 TFECO14948 347 aaPredicted RBP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 CDC40O60508 579 aaKnown RBP eCLIP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 TOXO94900 526 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 ESR1P03372 595 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 MSX1P28360 303 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 IMPA1P29218 277 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 DNAJA1P31689 397 aaKnown RBP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 PTGS2P35354 604 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 MEOX1P50221 254 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 CLCN7P51798 805 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 ITGA8P53708 1063 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 IST1P53990 364 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 OR4D2P58180 307 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 RPS15AP62244 130 aaKnown RBP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 SNX1Q13596 522 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 CUL1Q13616 776 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 RNF187Q5TA31 235 aaPredicted RBP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 MRNIPQ6NTE8 343 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 RAD9BQ6WBX8 426 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 PCGF5Q86SE9 256 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 RPS19BP1Q86WX3 136 aaKnown RBP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 DMRTC2Q8IXT2 367 aaPredicted RBP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 PLPP5Q8NEB5 264 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 OR5T3Q8NGG3 340 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 ELP5Q8TE02 316 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 C1orf54Q8WWF1 131 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 ASB5Q8WWX0 329 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 EBNA1BP2Q99848 306 aaKnown RBP8.52□□□□□ -1.05
SYNE2-209ENST00000553308 ZNF559Q9BR84 538 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 IL22Q9GZX6 179 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 ANKHQ9HCJ1 492 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 TMEM184CQ9NVA4 438 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 SYBUQ9NX95 663 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 ZNF148Q9UQR1 794 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 RNF6Q9Y252 685 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 NAALAD2Q9Y3Q0 740 aa8.52□□□□□ -1.05
SYNE2-209ENST00000553308 KCNE1BA0A087WTH5 132 aa8.51□□□□□ -1.05
SYNE2-209ENST00000553308 FOXO6A8MYZ6 492 aa8.51□□□□□ -1.05
SYNE2-209ENST00000553308 HS6ST1O60243 411 aa8.51□□□□□ -1.05
SYNE2-209ENST00000553308 KIF5CO60282 957 aa8.51□□□□□ -1.05
SYNE2-209ENST00000553308 DNAJB6O75190 326 aa8.51□□□□□ -1.05
SYNE2-209ENST00000553308 IPO7O95373 1038 aaKnown RBP8.51□□□□□ -1.05
SYNE2-209ENST00000553308 TFEBP19484 476 aa8.51□□□□□ -1.05
SYNE2-209ENST00000553308 OGNP20774 298 aaKnown RBP8.51□□□□□ -1.05
SYNE2-209ENST00000553308 MGAT1P26572 445 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms