RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ZSCAN9O15535 394 aaPredicted RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 NDUFS4O43181 175 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 CAPN1P07384 714 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 SERPINB5P36952 375 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 FOXA1P55317 472 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 BST1Q10588 318 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 STX3Q13277 289 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 DDX39BQ13838 428 aaKnown RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 TCTE1Q5JU00 501 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 TCHHL1Q5QJ38 904 aaPredicted RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 CEACAM20Q6UY09 585 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 RNF175Q8N4F7 328 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 ZNF655Q8N720 491 aaPredicted RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 DYDC1Q8WWB3 177 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 TM4SF19Q96DZ7 209 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 DDA1Q9BW61 102 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 C20orf27Q9GZN8 174 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 NRSN2Q9GZP1 204 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 PRM3Q9NNZ6 103 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 PCDHGA11Q9Y5H2 935 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 ANKDD1BA6NHY2 528 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 TMEM114B3SHH9 223 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 GRK2P25098 689 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 NEK2P51955 445 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 ABCE1P61221 599 aaKnown RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 PRTGQ2VWP7 1150 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.22■□□□□ 0.83
VPS29-206ENST00000549578 TTC19Q6DKK2 380 aaPredicted RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 BPHLQ86WA6 291 aaPredicted RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 TMEM126BQ8IUX1 230 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 TTLQ8NG68 377 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 HUS1BQ8NHY5 278 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 METTL6Q8TCB7 284 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 CREB3L4Q8TEY5 395 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 CCT6BQ92526 530 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 MTFMTQ96DP5 389 aaKnown RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 MAGEB10Q96LZ2 347 aaPredicted RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 SLC46A1Q96NT5 459 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 RHBGQ9H310 441 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 FOXJ2Q9P0K8 574 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 RUVBL1Q9Y265 456 aaKnown RBP20.22■□□□□ 0.83
VPS29-206ENST00000549578 NEUROG3Q9Y4Z2 214 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 TIMM22Q9Y584 194 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 TRABD2BA6NFA1 517 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 ZNF749O43361 778 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 SCRG1O75711 98 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 HSPA4LO95757 839 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 ENO1P06733 434 aaKnown RBP20.21■□□□□ 0.83
VPS29-206ENST00000549578 SLC1A6P48664 564 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 GALNT1Q10472 559 aaPredicted RBP20.21■□□□□ 0.83
VPS29-206ENST00000549578 SGO1Q5FBB7 561 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 FRG2Q64ET8 278 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 ARFGAP2Q8N6H7 521 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 KCT2Q8NC54 265 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 CAMKVQ8NCB2 501 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 TRPV3Q8NET8 790 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 WDR20Q8TBZ3 569 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 AGR3Q8TD06 166 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 REPS1Q96D71 796 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 FRG2BQ96QU4 278 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 MTERF1Q99551 399 aaKnown RBP20.21■□□□□ 0.83
VPS29-206ENST00000549578 ASPSCR1Q9BZE9 553 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 MANSC1Q9H8J5 431 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 EML4Q9HC35 981 aaKnown RBP20.21■□□□□ 0.83
VPS29-206ENST00000549578 FARSBQ9NSD9 589 aaKnown RBP20.21■□□□□ 0.83
VPS29-206ENST00000549578 PCDHGA3Q9Y5H0 932 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 AKAP13Q12802 2813 aa20.21■□□□□ 0.83
VPS29-206ENST00000549578 FITM1A5D6W6 292 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 CRCPO75575 148 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 SLC35G6P0C7Q6 338 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 ZNF28P17035 718 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 RBMS1P29558 406 aaKnown RBP20.2■□□□□ 0.82
VPS29-206ENST00000549578 HMOX2P30519 316 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 SNRPNP63162 240 aaKnown RBP20.2■□□□□ 0.82
VPS29-206ENST00000549578 GRM7Q14831 915 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 RTP5Q14D33 572 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 TMEM164Q5U3C3 297 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 CLEC6AQ6EIG7 209 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 TLDC1Q6P9B6 456 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 TRIM42Q8IWZ5 723 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 ZNF473Q8WTR7 871 aaKnown RBP20.2■□□□□ 0.82
VPS29-206ENST00000549578 ZNF75CPQ92670 426 aaPredicted RBP20.2■□□□□ 0.82
VPS29-206ENST00000549578 SLC29A3Q9BZD2 475 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 ELOVL6Q9H5J4 265 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 SNX6Q9UNH7 406 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 MSRB2Q9Y3D2 182 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 FIS1Q9Y3D6 152 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 AK5Q9Y6K8 562 aa20.2■□□□□ 0.82
VPS29-206ENST00000549578 HYKKA2RU49 373 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 TMEM233B4DJY2 109 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 SH3BGRLO75368 114 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 CLEC3AO75596 197 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 MED26O95402 600 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 TBX6O95947 436 aaPredicted RBP20.19■□□□□ 0.82
VPS29-206ENST00000549578 NTRK1P04629 796 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 GSTM2P28161 218 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 SERPINB3P29508 390 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 HTR6P50406 440 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 HYAL2Q12891 473 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 IFT88Q13099 833 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms