RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 REPS1Q96D71 796 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 DOK1Q99704 481 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 TM9SF3Q9HD45 589 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 RPS6KA6Q9UK32 745 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 PRKAB1Q9Y478 270 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 PLXND1Q9Y4D7 1925 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 PIPSLA2A3N6 862 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 H3BMQ9 156 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 SAP18O00422 153 aaKnown RBP17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 TGFB1P01137 390 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 AGXTP21549 392 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 CRYBA2P53672 197 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 PNLIPRP1P54315 467 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 ANXA8L1Q5VT79 327 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 PDE12Q6L8Q7 609 aaKnown RBP17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 EIF3MQ7L2H7 374 aaKnown RBP17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 C11orf96Q7Z7L8 435 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 GALNT5Q7Z7M9 940 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 MMAAQ8IVH4 418 aaKnown RBP17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 CPA6Q8N4T0 437 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 VPS37AQ8NEZ2 397 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 ZNF420Q8TAQ5 688 aaPredicted RBP17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 SNX19Q92543 992 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 HSH2DQ96JZ2 352 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 COG8Q96MW5 612 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 ASB16Q96NS5 453 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 ZDHHC5Q9C0B5 715 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 FANCEQ9HB96 536 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 DMRT3Q9NQL9 472 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 EXD2Q9NVH0 621 aa17.83■□□□□ 0.44
PRPF40B-208ENST00000548436 COL4A3Q01955 1670 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 C17orf113A0A1B0GUU1 675 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 FOXE1O00358 373 aaPredicted RBP17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 SLC16A6O15403 523 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 ABCB7O75027 752 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 NTRK1P04629 796 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 FABP3P05413 133 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 JUNBP17275 347 aaPredicted RBP17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 DAPP51397 102 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 RAD23AP54725 363 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 BIRC2Q13490 618 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 VEZF1Q14119 521 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 RGNQ15493 299 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 TMEM52BQ4KMG9 183 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 ZC3H12BQ5HYM0 836 aaKnown RBP17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 AP1ARQ63HQ0 302 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 COMMD6Q7Z4G1 85 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 KIAA1958Q8N8K9 716 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 PLA2G15Q8NCC3 412 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 OR2L2Q8NH16 312 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 WDR48Q8TAF3 677 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 MAL2Q969L2 176 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 TUBA1CQ9BQE3 449 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 EFCAB11Q9BUY7 163 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 GABARAPL1Q9H0R8 117 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 OR51B5Q9H339 312 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 MAPRE3Q9UPY8 281 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 TMEM98Q9Y2Y6 226 aa17.82■□□□□ 0.44
PRPF40B-208ENST00000548436 MYO1GB0I1T2 1018 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 KLHL18O94889 574 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 ABCB1P08183 1280 aaPredicted RBP17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 HTR1AP08908 422 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 MATN1P21941 496 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 IGFBP5P24593 272 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 MC1RQ01726 317 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 ZNF763Q0D2J5 394 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 SKIV2LQ15477 1246 aaKnown RBP17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 RFX4Q33E94 735 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 IER5LQ5T953 404 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 NXPE4Q6UWF7 544 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 ERN2Q76MJ5 926 aaKnown RBP17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 ZNF740Q8NDX6 193 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 OR4K1Q8NGD4 311 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 OR4A15Q8NGL6 344 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 OR13F1Q8NGS4 319 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 SLC5A11Q8WWX8 675 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 PPP1R16AQ96I34 528 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 ZNF514Q96K75 400 aaPredicted RBP17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 IL17FQ96PD4 163 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 DCUN1D5Q9BTE7 237 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 ITM2CQ9NQX7 267 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 DPP7Q9UHL4 492 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 ATP6V1HQ9UI12 483 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 GPR34Q9UPC5 381 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 ORC6Q9Y5N6 252 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 GMEB1Q9Y692 573 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 TRPM6Q9BX84 2022 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 RNASET2O00584 256 aaKnown RBP17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 FKBP9O95302 570 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 CALRP27797 417 aaKnown RBP17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 PIGFQ07326 219 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 NUMA1Q14980 2115 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 EIF4HQ15056 248 aaKnown RBP17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 SPARTQ8N0X7 666 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 NAGSQ8N159 534 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 GAB3Q8WWW8 586 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 OR52A5Q9H2C5 316 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 DPEP2Q9H4A9 486 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms