RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 KCNK5O95279 499 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 HLA-EP13747 358 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 TIMP2P16035 220 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 ENGP17813 658 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 PLEKHG7Q6ZR37 379 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 LINC00299Q6ZSB3 139 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 SERPINA11Q86U17 422 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 GPR65Q8IYL9 337 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 ASB11Q8WXH4 323 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 TESCQ96BS2 214 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 TBC1D20Q96BZ9 403 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 MRGPRX3Q96LB0 322 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 PANX1Q96RD7 426 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 RAD9AQ99638 391 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 SLIRPQ9GZT3 109 aaKnown RBP12.08□□□□□ -0.48
RNF4-222ENST00000541204 PRDM8Q9NQV8 689 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 SIRT5Q9NXA8 310 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 SNX6Q9UNH7 406 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 MRPS23Q9Y3D9 190 aaKnown RBP12.08□□□□□ -0.48
RNF4-222ENST00000541204 HSPE1-MOB4S4R3N1 261 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 CARNS1A5YM72 827 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 FPGTO14772 594 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 CD36P16671 472 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 HOXB6P17509 224 aaKnown RBP12.08□□□□□ -0.48
RNF4-222ENST00000541204 FPR1P21462 350 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 VIPR1P32241 457 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 GSSP48637 474 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 DDX39BQ13838 428 aaKnown RBP12.08□□□□□ -0.48
RNF4-222ENST00000541204 CAMK1Q14012 370 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 VMACQ2NL98 169 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 KIAA1614Q5VZ46 1190 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 BRAT1Q6PJG6 821 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 ZNF621Q6ZSS3 439 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 SLC22A16Q86VW1 577 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 TSPYL5Q86VY4 417 aaPredicted RBP12.08□□□□□ -0.48
RNF4-222ENST00000541204 ZZZ3Q8IYH5 903 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 SVOPQ8N4V2 548 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 LMNTD1Q8N9Z9 388 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 CDC26Q8NHZ8 85 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 PHF10Q8WUB8 498 aaKnown RBP12.08□□□□□ -0.48
RNF4-222ENST00000541204 MED8Q96G25 268 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 HSH2DQ96JZ2 352 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 REXO4Q9GZR2 422 aaKnown RBP12.08□□□□□ -0.48
RNF4-222ENST00000541204 CERS4Q9HA82 394 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 PRKAG2Q9UGJ0 569 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 IL36AQ9UHA7 158 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 ERVK-11Q9UQG0 969 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 PTPRSQ13332 1948 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 DENND4CQ5VZ89 1909 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 SCN8AQ9UQD0 1980 aa12.08□□□□□ -0.48
RNF4-222ENST00000541204 ANTXRLA6NF34 631 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PCDHGA12O60330 932 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 WBP4O75554 376 aaKnown RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 ALOX5P09917 674 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 EFNA1P20827 205 aaPredicted RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 KDELR2P33947 212 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 TGFBR2P37173 567 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 KIR3DL1P43629 444 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 CTSCP53634 463 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 TSTA3Q13630 321 aaPredicted RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 DHCR24Q15392 516 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 SF1Q15637 639 aaKnown RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 SYT16Q17RD7 645 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 CCSMST1Q4G0I0 132 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 METTL2BQ6P1Q9 378 aaKnown RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 TMC5Q6UXY8 1006 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PLD3Q8IV08 490 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 SFTPA1Q8IWL2 248 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PSMA8Q8TAA3 256 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 POP5Q969H6 163 aaKnown RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 TPD52L3Q96J77 140 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PSD2Q9BQI7 771 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 SLC12A9Q9BXP2 914 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 ZBTB20Q9HC78 741 aaPredicted RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 IRAK3Q9Y616 596 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 IGLV3-16A0A075B6K0 115 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 KCNE1BA0A087WTH5 132 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 EFCAB9A8MZ26 197 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 TSPAN6O43657 245 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PRAMEF4O60810 478 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 SEMG1P04279 462 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 CBSLP0DN79 551 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 CYP2A6P11509 494 aaPredicted RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 CBSP35520 551 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 GRK3P35626 688 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 DGKGP49619 791 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 RPP38P78345 283 aaKnown RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 AGAP7PQ5VUJ5 663 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PRAMEF9Q5VWM5 478 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PDE12Q6L8Q7 609 aaKnown RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 PRSS48Q7RTY5 328 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PTOV1Q86YD1 416 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 MINDY2Q8NBR6 621 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 NELL1Q92832 810 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 ZHX1-C8orf76Q96EF9 292 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 CMTM7Q96FZ5 175 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 DSN1Q9H410 356 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 THUMPD1Q9NXG2 353 aaKnown RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 TBC1D14Q9P2M4 693 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms