RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 LIMD1Q9UGP4 676 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 ING4Q9UNL4 249 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 DTX4Q9Y2E6 619 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 ANK1P16157 1881 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 RAB19A4D1S5 217 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 SLC35F4A4IF30 521 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 CASTOR2A6NHX0 329 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 C2CD4BA6NLJ0 364 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 ACRP10323 421 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 POU2F1P14859 743 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 EPHA2P29317 976 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 MAP2K3P46734 347 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 CLCN4P51793 760 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 DIO3P55073 304 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 SSTP61278 116 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 PSPHP78330 225 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 RCAN2Q14206 197 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 PAN2Q504Q3 1202 aaKnown RBP9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 C17orf107Q6ZR85 190 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 SLC26A9Q7LBE3 791 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 OVCH2Q7RTZ1 564 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 HIPK1Q86Z02 1210 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 MFSD6LQ8IWD5 586 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 FAM181AQ8N9Y4 354 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 TSPEARQ8WU66 669 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 RNF34Q969K3 372 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 RHBDF1Q96CC6 855 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 WDFY2Q96P53 400 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 RTP3Q9BQQ7 232 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 CLEC4MQ9H2X3 399 aaPredicted RBP9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 TMEM245Q9H330 911 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 ZFP64Q9NPA5 681 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 TMEM161AQ9NX61 479 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 LEF1Q9UJU2 399 aaPredicted RBP9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 PCDHB7Q9Y5E2 793 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 KLK4Q9Y5K2 254 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 DNAJC15Q9Y5T4 150 aa9.17□□□□□ -0.94
CTNNA1-243ENST00000540387 SCN5AQ14524 2016 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 ABCD4O14678 606 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 PIP5K1BO14986 540 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 PROM1O43490 865 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 GRAP2O75791 330 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 CFDP00746 253 aaPredicted RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 ITGB1P05556 798 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 FABP1P07148 127 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 HGFP14210 728 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 PRKAR1BP31321 381 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 SLC19A1P41440 591 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 ZFP36L2P47974 494 aaKnown RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 GATMP50440 423 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 MTPNP58546 118 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 LAPTM4AQ15012 233 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 WSCD2Q2TBF2 565 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 PROX2Q3B8N5 592 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 COL13A1Q5TAT6 717 aaPredicted RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 GLB1LQ6UWU2 654 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 RRM2BQ7LG56 351 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 ZNF280BQ86YH2 543 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 CCDC71Q8IV32 467 aaPredicted RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 GHDCQ8N2G8 530 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 SRFBP1Q8NEF9 429 aaKnown RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 OR11H4Q8NGC9 324 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 APH1BQ8WW43 257 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 UPRTQ96BW1 309 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 BARD1Q99728 777 aaKnown RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 GSX2Q9BZM3 304 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 NSMCE4AQ9NXX6 385 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 TSR3Q9UJK0 312 aaKnown RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 NDRG4Q9ULP0 352 aaKnown RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 DNMT3AQ9Y6K1 912 aaPredicted RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 MFSD2BA6NFX1 497 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 INPPL1O15357 1258 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 PCDHGA12O60330 932 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 B4GALT3O60512 393 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 GREM1O60565 184 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 PLOD3O60568 738 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 HSMCR30P0CW71 290 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 LBPP18428 481 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 GDI2P50395 445 aaKnown RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 CLDN20P56880 219 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 LILRA4P59901 499 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 CREMQ03060 361 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 ZNF124Q15973 351 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 MICAQ29983 383 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 TECRLQ5HYJ1 363 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 CERCAMQ5T4B2 595 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 RTL4Q6ZR62 310 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 TSPYL5Q86VY4 417 aaPredicted RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 CHPFQ8IZ52 775 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 CRIPAKQ8N1N5 446 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 LRRC52Q8N7C0 313 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 TTC29Q8NA56 475 aaPredicted RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 NETO2Q8NC67 525 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 OR6C4Q8NGE1 309 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 ELAC1Q9H777 363 aaKnown RBP9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 SLAMF7Q9NQ25 335 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 VNN3Q9NY84 501 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 NLKQ9UBE8 527 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 GPR45Q9Y5Y3 372 aa9.16□□□□□ -0.94
CTNNA1-243ENST00000540387 FAM95CA0A1B0GW59 222 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms