RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 SH3RF2Q8TEC5 729 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ZNF606Q8WXB4 792 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SLC38A4Q969I6 547 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.6□□□□□ -1.83
MCF2-210ENST00000536274 TMEM125Q96AQ2 219 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ZNF419Q96HQ0 510 aaPredicted RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 FAM167AQ96KS9 214 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 GPR137Q96N19 417 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 LGMNQ99538 433 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 VRK1Q99986 396 aaPredicted RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 ITPAQ9BY32 194 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 CHIAQ9BZP6 476 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SLC22A4Q9H015 551 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SDCBP2Q9H190 292 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SLC39A1Q9NY26 324 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 DNAJB11Q9UBS4 358 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TMEFF2Q9UIK5 374 aaPredicted RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 SARDHQ9UL12 918 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 MKLN1Q9UL63 735 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 RALGAPA2Q2PPJ7 1873 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 PRAMEF33A0A0G2JMD5 474 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 APOC4-APOC2K7ER74 178 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TERTO14746 1132 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 STX7O15400 261 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 PRAMEF10O60809 474 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 UGT2B17O75795 530 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 HTR3BO95264 441 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 APOC2P02655 101 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ALPPP05187 535 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ARSBP15848 533 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 PTPRAP18433 802 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ZP3P21754 424 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 GPX3P22352 226 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 CHMP24386 653 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ITGB8P26012 769 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 PLA2G5P39877 138 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SOX3P41225 446 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 CDH8P55286 799 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 RRAS2P62070 204 aaPredicted RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 EEF1A1P68104 462 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 FLI1Q01543 452 aaPredicted RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 EEF1A2Q05639 463 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 SEMA3BQ13214 749 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SKP2Q13309 424 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 CTBP1Q13363 440 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 MAB21L1Q13394 359 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 GTF2H3Q13889 308 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 IRF4Q15306 451 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 MED22Q15528 200 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TSTQ16762 297 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 MPEG1Q2M385 716 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 GNASQ5JWF2 1037 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 EEF1A1P5Q5VTE0 462 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SDHAF4Q5VUM1 108 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TTC23Q5W5X9 447 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 POMZP3Q6PJE2 187 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 B3GLCTQ6Y288 498 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TMPRSS11AQ6ZMR5 421 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 RTL4Q6ZR62 310 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ASB18Q6ZVZ8 466 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 HTR3DQ70Z44 454 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 KDELC2Q7Z4H8 507 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ADGRD2Q7Z7M1 963 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 NUDT13Q86X67 352 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 RIMKLAQ8IXN7 391 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 GPALPP1Q8IXQ4 340 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ENTHD1Q8IYW4 607 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SLC34A3Q8N130 599 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 ZNF655Q8N720 491 aaPredicted RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 SRFBP1Q8NEF9 429 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 ATP6V1C2Q8NEY4 427 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 OR52K1Q8NGK4 314 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.6□□□□□ -1.83
MCF2-210ENST00000536274 SMG7Q92540 1137 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 NR4A3Q92570 626 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TMEM203Q969S6 136 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TADA1Q96BN2 335 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 PGAP3Q96FM1 320 aaPredicted RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 LRRC46Q96FV0 321 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 PDLIM5Q96HC4 596 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 TNIP3Q96KP6 325 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 TOX2Q96NM4 488 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 MRPL45Q9BRJ2 306 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 SLC25A23Q9BV35 468 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 FTHL17Q9BXU8 183 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 SRRQ9GZT4 340 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 QRSL1Q9H0R6 528 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 OR51B5Q9H339 312 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 LDAHQ9H6V9 325 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 AKTIPQ9H8T0 292 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 C1orf112Q9NSG2 853 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 BABAM2Q9NXR7 383 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 HCN3Q9P1Z3 774 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 UBQLN2Q9UHD9 624 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 RAPGEFL1Q9UHV5 662 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 STOML2Q9UJZ1 356 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 VAV3Q9UKW4 847 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 OAS3Q9Y6K5 1087 aaKnown RBP3.6□□□□□ -1.83
MCF2-210ENST00000536274 A0A0G2JPF8 293 aa3.6□□□□□ -1.83
MCF2-210ENST00000536274 UBA6A0AVT1 1052 aaPredicted RBP3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms