RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 CHD9Q3L8U1 2897 aa3.22□□□□□ -1.89
USP48-215ENST00000534705 SYNRGQ9UMZ2 1314 aa3.21□□□□□ -1.89
USP48-215ENST00000534705 USP27XA6NNY8 438 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 AGAP14A8MT82 685 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 UBE2CO00762 179 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 CYTH3O43739 400 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 HS6ST1O60243 411 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 B3GALNT1O75752 331 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 KCNK5O95279 499 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 SLC25A27O95847 323 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 SNAI1O95863 264 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 PGK2P07205 417 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 TUBBP07437 444 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 CFC1BP0CG36 223 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 CFC1P0CG37 223 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 GOLGA8HP0CJ92 632 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 TOP1P11387 765 aaKnown RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 FGF5P12034 268 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 P4HA1P13674 534 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 GABRB1P18505 474 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 SAT1P21673 171 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 PON1P27169 355 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 KRT2P35908 639 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 SLC1A4P43007 532 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 NT5C2P49902 561 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 STAT2P52630 851 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 RAD23AP54725 363 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 UBE2HP62256 183 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 TUBB4BP68371 445 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 UBXN2AP68543 259 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 CNTN2Q02246 1040 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 PPARDQ03181 441 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 PTPN14Q15678 1187 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 IMMTQ16891 758 aaKnown RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 BEND6Q5SZJ8 279 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 SFMBT2Q5VUG0 894 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 ZDHHC20Q5W0Z9 365 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 AP1ARQ63HQ0 302 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 SNRNP48Q6IEG0 339 aaKnown RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 IKBIPQ70UQ0 350 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 ZNF534Q76KX8 674 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 PIWIL4Q7Z3Z4 852 aaKnown RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 DNAJB7Q7Z6W7 309 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 ARID3BQ8IVW6 561 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 KLHDC8BQ8IXV7 354 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 ADGRF2Q8IZF7 708 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 FAM133AQ8N9E0 248 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 SPC24Q8NBT2 197 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 RBM15BQ8NDT2 890 aaKnown RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 OR10V1Q8NGI7 309 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 CTCFLQ8NI51 663 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 GSDMBQ8TAX9 411 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 GDAP1Q8TB36 358 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 CHURC1Q8WUH1 139 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 ESR2Q92731 530 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 ZNF524Q96C55 264 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 C16orf45Q96MC5 204 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 CMTM3Q96MX0 182 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 DEFB118Q96PH6 123 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 GBP5Q96PP8 586 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 F2RL3Q96RI0 385 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 SLC22A12Q96S37 553 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 IWS1Q96ST2 819 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 LZTS2Q9BRK4 669 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 TEX13BQ9BXU2 312 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 KRT23Q9C075 422 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 DNAI2Q9GZS0 605 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 PRO3102Q9H379 93 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 RNF41Q9H4P4 317 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 SUDS3Q9H7L9 328 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 TRPV4Q9HBA0 871 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 ZBTB20Q9HC78 741 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 TRPV5Q9NQA5 729 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 PFDN4Q9NQP4 134 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 BATF3Q9NR55 127 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 ZNF624Q9P2J8 865 aaPredicted RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 MAD2L2Q9UI95 211 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 EXO1Q9UQ84 846 aaKnown RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 CMAHPQ9Y471 501 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 YIPF1Q9Y548 306 aa3.21□□□□□ -1.9
USP48-215ENST00000534705 MTCL1Q9Y4B5 1905 aaKnown RBP3.21□□□□□ -1.9
USP48-215ENST00000534705 CITO14578 2027 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 WDR19Q8NEZ3 1342 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 BRWD1Q9NSI6 2320 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 PRUNE2Q8WUY3 3088 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 OR2M5A3KFT3 312 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 PMS2P5A8MQ11 134 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 BLOC1S5-TXNDC5H3BN57 136 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 H3BQ06 376 aaPredicted RBP3.2□□□□□ -1.9
USP48-215ENST00000534705 SH2B2O14492 632 aaPredicted RBP3.2□□□□□ -1.9
USP48-215ENST00000534705 LIN7AO14910 233 aaPredicted RBP3.2□□□□□ -1.9
USP48-215ENST00000534705 PLPP2O43688 288 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 ERLIN2O94905 339 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 PGM3O95394 542 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 AMBPP02760 352 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 MT-ND3P03897 115 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 RARGP13631 454 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 CASTP20810 708 aaKnown RBP3.2□□□□□ -1.9
USP48-215ENST00000534705 ACSL1P33121 698 aa3.2□□□□□ -1.9
USP48-215ENST00000534705 MMP15P51511 669 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms