RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ACSM2BQ68CK6 577 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 PGAM4Q8N0Y7 254 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 LIX1Q8N485 282 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 FAM46DQ8NEK8 389 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 OR2L3Q8NG85 312 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 ZDHHC1Q8WTX9 485 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 UTP4Q969X6 686 aaKnown RBP20.34■□□□□ 0.85
VPS28-212ENST00000530836 SPDL1Q96EA4 605 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 DMRT3Q9NQL9 472 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 CDV3Q9UKY7 258 aaKnown RBP20.34■□□□□ 0.85
VPS28-212ENST00000530836 PRPF19Q9UMS4 504 aaKnown RBP20.34■□□□□ 0.85
VPS28-212ENST00000530836 MAPRE3Q9UPY8 281 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 ENTPD2Q9Y5L3 495 aa20.34■□□□□ 0.85
VPS28-212ENST00000530836 PCM1Q15154 2024 aa20.33■□□□□ 0.85
VPS28-212ENST00000530836 PRAMEF33A0A0G2JMD5 474 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 ANKDD1BA6NHY2 528 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 H7BY64 318 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 NR5A2O00482 541 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 TM4SF5O14894 197 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 ANKRD28O15084 1053 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 FLRT2O43155 660 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 BCKDHAP12694 445 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 PSMB5P28074 263 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 GPR18Q14330 331 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 SF1Q15637 639 aaKnown RBP20.33■□□□□ 0.84
VPS28-212ENST00000530836 RSPO4Q2I0M5 234 aaPredicted RBP20.33■□□□□ 0.84
VPS28-212ENST00000530836 REP15Q6BDI9 236 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 NOXRED1Q6NXP6 359 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 DSELQ8IZU8 1212 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 NAGSQ8N159 534 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 SLC37A2Q8TED4 501 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 APIPQ96GX9 242 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 PRAP1Q96NZ9 151 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 DPY30Q9C005 99 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 CUEDC1Q9NWM3 386 aaPredicted RBP20.33■□□□□ 0.84
VPS28-212ENST00000530836 SNX7Q9UNH6 387 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 DOLKQ9UPQ8 538 aa20.33■□□□□ 0.84
VPS28-212ENST00000530836 TRBV23OR9-2A0A075B6M9 112 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 CCDC154A6NI56 674 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 ISM1B1AKI9 464 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 LMO7DNF2Z398 122 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 MRASO14807 208 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 SH3BP5O60239 455 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 PRMT3O60678 531 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 CELA2BP08218 269 aaPredicted RBP20.32■□□□□ 0.84
VPS28-212ENST00000530836 CD1EP15812 388 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 SDHBP21912 280 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 GRK6P43250 576 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 RAP1GDS1P52306 607 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 CLNS1AP54105 237 aaKnown RBP20.32■□□□□ 0.84
VPS28-212ENST00000530836 CLDN8P56748 225 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 RPS13P62277 151 aaKnown RBP20.32■□□□□ 0.84
VPS28-212ENST00000530836 CSNK1G2P78368 415 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 RBBP5Q15291 538 aaKnown RBP20.32■□□□□ 0.84
VPS28-212ENST00000530836 ADGRF3Q8IZF5 1079 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 DEFB107AQ8IZN7 70 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 CHTF18Q8WVB6 975 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 C11orf24Q96F05 449 aaPredicted RBP20.32■□□□□ 0.84
VPS28-212ENST00000530836 APOLD1Q96LR9 279 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 NRTNQ99748 197 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 THTPAQ9BU02 230 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 SARGQ9BW04 601 aa20.32■□□□□ 0.84
VPS28-212ENST00000530836 TRBC2A0A5B9 178 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 FBP2O00757 339 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 NPPAP01160 153 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 GIMD1P0DJR0 217 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 MEF2AQ02078 507 aaPredicted RBP20.31■□□□□ 0.84
VPS28-212ENST00000530836 TBL3Q12788 808 aaKnown RBP20.31■□□□□ 0.84
VPS28-212ENST00000530836 INAVAQ3KP66 663 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 GALNT18Q6P9A2 607 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 PIP4P1Q86T03 277 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 NAXDQ8IW45 347 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 SCUBE1Q8IWY4 988 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 STARD8Q92502 1023 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 TEX37Q96LM6 180 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 NPAS2Q99743 824 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 ACTL8Q9H568 366 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 SLC52A3Q9NQ40 469 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 GID8Q9NWU2 228 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 AHSPQ9NZD4 102 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 LEF1Q9UJU2 399 aaPredicted RBP20.31■□□□□ 0.84
VPS28-212ENST00000530836 BTBD3Q9Y2F9 522 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 CEP250Q9BV73 2442 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 TMEM131Q92545 1883 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 YY2O15391 372 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 CFLARO15519 480 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 EEDO75530 441 aaKnown RBP20.31■□□□□ 0.84
VPS28-212ENST00000530836 IL6P05231 212 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 PEBP1P30086 187 aaKnown RBP20.31■□□□□ 0.84
VPS28-212ENST00000530836 ELF3P78545 371 aaPredicted RBP20.31■□□□□ 0.84
VPS28-212ENST00000530836 HHEXQ03014 270 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 VPS26BQ4G0F5 336 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 ZNF740Q8NDX6 193 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 RHBDD1Q8TEB9 315 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 SPNS1Q9H2V7 528 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 UCK1Q9HA47 277 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 WDR41Q9HAD4 459 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 SPHK1Q9NYA1 384 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 NLGN3Q9NZ94 848 aa20.31■□□□□ 0.84
VPS28-212ENST00000530836 ANKMY1Q9P2S6 941 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms