RNA–Protein interactions for RNA: ENST00000527064.1

NXF1-204, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-204	ENST00000527064	C18orf21	Q32NC0	220 aa	Predicted RBP	13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	FAM69B	Q5VUD6	431 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	TMEM214	Q6NUQ4	689 aa	Known RBP	13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	NIPAL1	Q6NVV3	410 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	ADGRD1	Q6QNK2	874 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	MRGPRE	Q86SM8	312 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	TRPV3	Q8NET8	790 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	MIEF2	Q96C03	454 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	SEC16B	Q96JE7	1060 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	VPS50	Q96JG6	964 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	CD244	Q9BZW8	370 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	PPCS	Q9HAB8	311 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	ANKH	Q9HCJ1	492 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	MKKS	Q9NPJ1	570 aa	Predicted RBP	13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	ACSS2	Q9NR19	701 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	CTSF	Q9UBX1	484 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	TMCO1	Q9UM00	188 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	MAP4K5	Q9Y4K4	846 aa		13.69	□□□□□ -0.22
NXF1-204	ENST00000527064	ANKRD12	Q6UB98	2062 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	IGLV3-12	A0A075B6K2	115 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064		A0A0A6YYC8	382 aa	Predicted RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	URAD	A6NGE7	173 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	VSTM2B	A6NLU5	285 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064		H0YIG0	161 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	MKRN2OS	H3BPM6	223 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064		I3L1I5	382 aa	Predicted RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	NSA2	O95478	260 aa	Known RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	STATH	P02808	62 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	SERPIND1	P05546	499 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	RBP1	P09455	135 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	GFAP	P14136	432 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	KCNC1	P48547	511 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	SLC29A2	Q14542	456 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	HERC3	Q15034	1050 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	RBBP5	Q15291	538 aa	Known RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	SLCO4C1	Q6ZQN7	724 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	MED25	Q71SY5	747 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	ABHD13	Q7L211	337 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	DTWD1	Q8N5C7	304 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	EXD3	Q8N9H8	876 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	TMEM102	Q8N9M5	508 aa	Predicted RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	ZCCHC10	Q8TBK6	192 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	NT5C	Q8TCD5	201 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	UBLCP1	Q8WVY7	318 aa	Predicted RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	PTCD3	Q96EY7	689 aa	Known RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	FER1L6-AS2	Q96M78	137 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	SPSB2	Q99619	263 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	YIPF2	Q9BWQ6	316 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	SOX17	Q9H6I2	414 aa	Predicted RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	ANKZF1	Q9H8Y5	726 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	SEMA3G	Q9NS98	782 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	OPTC	Q9UBM4	332 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	TRPC4	Q9UBN4	977 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	G3BP2	Q9UN86	482 aa	Known RBP	13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	SLC22A7	Q9Y694	548 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	FER1L5	A0AVI2	2057 aa		13.68	□□□□□ -0.22
NXF1-204	ENST00000527064	ARGFX	A6NJG6	315 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064		K7EPI3	171 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	FOXS1	O43638	330 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	UMOD	P07911	640 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	ZGLP1	P0C6A0	271 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	MMP11	P24347	488 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	VARS	P26640	1264 aa	Known RBP	13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	HPD	P32754	393 aa	Predicted RBP	13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	ALDH18A1	P54886	795 aa	Known RBP	13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	LAPTM5	Q13571	262 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	ATP1A4	Q13733	1029 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	SLBP	Q14493	270 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	SETDB1	Q15047	1291 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	XKR6	Q5GH73	641 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	TECRL	Q5HYJ1	363 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	PAGE2B	Q5JRK9	111 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	METTL2B	Q6P1Q9	378 aa	Known RBP	13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	TMIGD1	Q6UXZ0	262 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	TIFAB	Q6ZNK6	161 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	LCA5	Q86VQ0	697 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	AMER3	Q8N944	861 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	KCT2	Q8NC54	265 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	ZNF740	Q8NDX6	193 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	C9orf43	Q8TAL5	461 aa	Predicted RBP	13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	STT3B	Q8TCJ2	826 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	SCYL1	Q96KG9	808 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	GPR78	Q96P69	363 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	CRB3	Q9BUF7	120 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	EFCAB11	Q9BUY7	163 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	TGIF2	Q9GZN2	237 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	ING2	Q9H160	280 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	SLC25A18	Q9H1K4	315 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	SPNS1	Q9H2V7	528 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	EPB41L4B	Q9H329	900 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	NT5DC2	Q9H857	520 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	COPG2	Q9UBF2	871 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	ANGPTL3	Q9Y5C1	460 aa		13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	TNPO3	Q9Y5L0	923 aa	Known RBP	13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	MDC1	Q14676	2089 aa	Known RBP	13.67	□□□□□ -0.22
NXF1-204	ENST00000527064	SMG1	Q96Q15	3661 aa	Known RBP	13.66	□□□□□ -0.22
NXF1-204	ENST00000527064	MAP2K7	O14733	419 aa		13.66	□□□□□ -0.22
NXF1-204	ENST00000527064	PCDH17	O14917	1159 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms