RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, humanhuman

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-205ENST00000514469 CDKL1Q00532 357 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 MEF2AQ02078 507 aaPredicted RBP9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 ZNF460Q14592 562 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 LINC00696Q6ZRV3 163 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 SHISA5Q8N114 240 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 AFAP1L2Q8N4X5 818 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 NKAPQ8N5F7 415 aaKnown RBP9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 KCT2Q8NC54 265 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 BBOF1Q8ND07 529 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 OR51Q1Q8NH59 317 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 DNAJB14Q8TBM8 379 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 BRIX1Q8TDN6 353 aaKnown RBP9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 SSC4DQ8WTU2 575 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 ANKRD7Q92527 254 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 CNDP1Q96KN2 507 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 LMF1Q96S06 567 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 TUBB6Q9BUF5 446 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 TRIM54Q9BYV2 358 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 SPNS1Q9H2V7 528 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 RHOJQ9H4E5 214 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 POPDC3Q9HBV1 291 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 ANKHQ9HCJ1 492 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 HCN3Q9P1Z3 774 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 COPG1Q9Y678 874 aaKnown RBP9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 SLC22A7Q9Y694 548 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 USP9YO00507 2555 aaPredicted RBP9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 CCDC88CQ9P219 2028 aa9.89□□□□□ -0.83
HMGXB3-205ENST00000514469 TRBC2A0A5B9 178 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 SGK494L7N484 410 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 CDC7O00311 574 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 E2F3O00716 465 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 NDUFS4O43181 175 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 RAD51CO43502 376 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 RDH16O75452 317 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 WISP3O95389 354 aaPredicted RBP9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 RNF224P0DH78 156 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 ITGAMP11215 1152 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 TAS2R39P59534 338 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 AP2B1P63010 937 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 MRPS25P82663 173 aaKnown RBP9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 REEP5Q00765 189 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 ILF2Q12905 390 aaKnown RBP9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 PWP1Q13610 501 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 HERC3Q15034 1050 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 TLR1Q15399 786 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 EIF2S3LQ2VIR3 472 aaKnown RBP9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 CATSPEREQ5SY80 951 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 RPUSD3Q6P087 351 aaKnown RBP9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 LANCL3Q6ZV70 420 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 CEP97Q8IW35 865 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 SIRT6Q8N6T7 355 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 ST6GALNAC3Q8NDV1 305 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 ZNF740Q8NDX6 193 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 SPATA4Q8NEY3 305 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 NT5CQ8TCD5 201 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 ANKRD49Q8WVL7 239 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 SLC5A11Q8WWX8 675 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 NEIL2Q969S2 332 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 MOCOSQ96EN8 888 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 VPS39Q96JC1 886 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 IMMP1LQ96LU5 166 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 TSNARE1Q96NA8 513 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 ERP44Q9BS26 406 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 PELI2Q9HAT8 420 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 SMYD2Q9NRG4 433 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 AGPAT4Q9NRZ5 378 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 GRHL1Q9NZI5 618 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 WHRNQ9P202 907 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 PTGFRNQ9P2B2 879 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 C19orf25Q9UFG5 118 aaPredicted RBP9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 NAALAD2Q9Y3Q0 740 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 OARD1Q9Y530 152 aa9.88□□□□□ -0.83
HMGXB3-205ENST00000514469 ANKUB1A6NFN9 424 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 ZNF860A6NHJ4 632 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 EIF3HO15372 352 aaKnown RBP eCLIP9.87□□□□□ -0.833e-6■□□□□ 11.2
HMGXB3-205ENST00000514469 OR1F1O43749 312 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 GALR3O60755 368 aaPredicted RBP9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 ICAM2P13598 275 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 SAT1P21673 171 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 SCTRP47872 440 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 SLC6A12P48065 614 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 TNFSF10P50591 281 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 ARG2P78540 354 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 RHAGQ02094 409 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 C2orf54Q08AI8 447 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 CDC16Q13042 620 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 CALCOCO2Q13137 446 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 CSHL1Q14406 222 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 TSNQ15631 228 aaKnown RBP9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 INAQ16352 499 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 MINDY4Q4G0A6 757 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 MFSD4BQ5TF39 518 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 CAPN12Q6ZSI9 719 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 CPEB2Q7Z5Q1 589 aaKnown RBP9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 ANKRD37Q7Z713 158 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 ADAMTSL2Q86TH1 951 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 THOC6Q86W42 341 aaKnown RBP9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 KLHDC8AQ8IYD2 350 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 TBC1D19Q8N5T2 526 aa9.87□□□□□ -0.83
HMGXB3-205ENST00000514469 AMER2Q8N7J2 671 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms