RNA–Protein interactions for RNA: ENST00000514267.1

CALCOCO2-223, Transcript of calcium binding and coiled-coil domain 2, human

TSL 2

Gene CALCOCO2, Length 336 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALCOCO2-223	ENST00000514267	CCDC60	Q8IWA6	550 aa	Predicted RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	PRSS35	Q8N3Z0	413 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ARL6IP6	Q8N6S5	226 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	LMNTD1	Q8N9Z9	388 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	KIAA0895	Q8NCT3	520 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	OR2T12	Q8NG77	320 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	OR11H4	Q8NGC9	324 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	OR10Q1	Q8NGQ4	319 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	OR1J1	Q8NGS3	322 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	OR52N5	Q8NH56	324 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	KIAA1524	Q8TCG1	905 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	URGCP	Q8TCY9	931 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	RNASE8	Q8TDE3	154 aa	Known RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	GRHL3	Q8TE85	626 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	PHLDA1	Q8WV24	401 aa	Predicted RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TSACC	Q96A04	125 aa	Predicted RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TMEM186	Q96B77	213 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	FAM111A	Q96PZ2	611 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	EPYC	Q99645	322 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	PKP2	Q99959	881 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	FAM213A	Q9BRX8	229 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TRAF4	Q9BUZ4	470 aa	Predicted RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TEX13A	Q9BXU3	409 aa	Predicted RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	NYX	Q9GZU5	481 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TLE6	Q9H808	572 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	MRPL17	Q9NRX2	175 aa	Known RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	FGF21	Q9NSA1	209 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	NINJ2	Q9NZG7	142 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ACTR3B	Q9P1U1	418 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	NOCT	Q9UK39	431 aa	Known RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	RALY	Q9UKM9	306 aa	Known RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	KDM6B	O15054	1643 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	DNMT1	P26358	1616 aa	Known RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	KIF14	Q15058	1648 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ADGB	Q8N7X0	1667 aa		3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	GPATCH8	Q9UKJ3	1502 aa	Known RBP	3.14	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TRAV18	A0A075B6X5	111 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	IGLV5-45	A0A087WSX0	123 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	PRSS46	E5RG02	174 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ZNF197	O14709	1029 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	SERPING1	P05155	500 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	MMP10	P09238	476 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	SP9	P0CG40	484 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	CCDC192	P0DO97	292 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	FGF5	P12034	268 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ARF4	P18085	180 aa	Predicted RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	CCNA2	P20248	432 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	EFNA1	P20827	205 aa	Predicted RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	CA4	P22748	312 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	CA6	P23280	308 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	MAGEB1	P43366	347 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	GPC3	P51654	580 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	FUT6	P51993	359 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	KRTAP10-7	P60409	375 aa	Predicted RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	HERV-K104	P61576	105 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	HTD2	P86397	168 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	MBTD1	Q05BQ5	628 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	GFPT1	Q06210	699 aa	Predicted RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	LGALS3BP	Q08380	585 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TRAP1	Q12931	704 aa	Known RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TAF10	Q12962	218 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TRA2A	Q13595	282 aa	Known RBP eCLIP	3.13	□□□□□ -1.91	3e-7	■■□□□ 14.1
CALCOCO2-223	ENST00000514267	PDE7A	Q13946	482 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	PDK1	Q15118	436 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	SF3B4	Q15427	424 aa	Known RBP eCLIP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	PHLDA2	Q53GA4	152 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	DNAJC21	Q5F1R6	531 aa	Known RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	SLC35D3	Q5M8T2	416 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	OTUD3	Q5T2D3	398 aa	Predicted RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	PDSS1	Q5T2R2	415 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	CD164L2	Q6UWJ8	174 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	UNQ6126/PRO20091	Q6UXV3	157 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	B3GLCT	Q6Y288	498 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	RBM43	Q6ZSC3	357 aa	Known RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	SERPINA12	Q8IW75	414 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	BATF2	Q8N1L9	274 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ZNF441	Q8N8Z8	693 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	CCDC63	Q8NA47	563 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	LILRB1	Q8NHL6	650 aa	Predicted RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	EXOC6	Q8TAG9	804 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ZNF473	Q8WTR7	871 aa	Known RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	EPSTI1	Q96J88	318 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	IL17F	Q96PD4	163 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	INPP4A	Q96PE3	977 aa	Predicted RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	KCNK16	Q96T55	309 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ZNF559	Q9BR84	538 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	URM1	Q9BTM9	101 aa	Known RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	POLR3C	Q9BUI4	534 aa	Predicted RBP	3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	NACAP1	Q9BZK3	213 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	KRT23	Q9C075	422 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	LAT2	Q9GZY6	243 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	CUEDC2	Q9H467	287 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	ZDHHC6	Q9H6R6	413 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	SYTL2	Q9HCH5	934 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	FAM118A	Q9NWS6	357 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	P4HTM	Q9NXG6	502 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	TAS2R3	Q9NYW6	316 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	UBQLN2	Q9UHD9	624 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	STUB1	Q9UNE7	303 aa		3.13	□□□□□ -1.91
CALCOCO2-223	ENST00000514267	EXOC6B	Q9Y2D4	811 aa		3.13	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms