RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CRHBPP24387 322 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 PTX3P26022 381 aaPredicted RBP11.54□□□□□ -0.56
NUP54-202ENST00000502850 GSTM2P28161 218 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 SERPINB1P30740 379 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 HSD17B2P37059 387 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 TMBIM6P55061 237 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 ITGA1P56199 1179 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 RBBP4Q09028 425 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 KCNAB2Q13303 367 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 ERN2Q76MJ5 926 aaKnown RBP11.54□□□□□ -0.56
NUP54-202ENST00000502850 SLC30A8Q8IWU4 369 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 SYNPOQ8N3V7 929 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 NATD1Q8N6N6 113 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 C11orf65Q8NCR3 313 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 VN1R2Q8NFZ6 395 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 OR2L2Q8NH16 312 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 CXorf40AQ8TE69 158 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 SMG7Q92540 1137 aaKnown RBP11.54□□□□□ -0.56
NUP54-202ENST00000502850 NEIL2Q969S2 332 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 ZNF566Q969W8 418 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 OR2AG1Q9H205 316 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 ADNPQ9H2P0 1102 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 REEP4Q9H6H4 257 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 SOX17Q9H6I2 414 aaPredicted RBP11.54□□□□□ -0.56
NUP54-202ENST00000502850 SMURF2Q9HAU4 748 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 ITM2BQ9Y287 266 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 CHD7Q9P2D1 2997 aa11.54□□□□□ -0.56
NUP54-202ENST00000502850 KIF26AQ9ULI4 1882 aaPredicted RBP11.54□□□□□ -0.56
NUP54-202ENST00000502850 PIPSLA2A3N6 862 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 EPOPA6NHQ4 379 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 NOBOXO60393 691 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 MRPS14O60783 128 aaKnown RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 LILRB5O75023 590 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 PAPLNO95428 1278 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SOD1P00441 154 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 LAMP1P11279 417 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 IDSP22304 550 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 KELP23276 732 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SHMT2P34897 504 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 RPS13P62277 151 aaKnown RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 RAE1P78406 368 aaKnown RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 FCHO2Q0JRZ9 810 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 FADDQ13158 208 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 PMS2P3Q13401 168 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SPIDRQ14159 915 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SLBPQ14493 270 aaKnown RBP eCLIP11.53□□□□□ -0.56
NUP54-202ENST00000502850 STARD3Q14849 445 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 POM121L1PQ3SYA9 428 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 CCSMST1Q4G0I0 132 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 TCEAL5Q5H9L2 206 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 TJAP1Q5JTD0 557 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 C6orf141Q5SZD1 244 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 C9orf64Q5T6V5 341 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 FAM46CQ5VWP2 391 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 TRMT11Q7Z4G4 463 aaKnown RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 DCP2Q8IU60 420 aaKnown RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 CROCCP3Q8IVE0 287 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 KRT78Q8N1N4 520 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 CHDHQ8NE62 594 aaPredicted RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 PIK3C3Q8NEB9 887 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 OR4A15Q8NGL6 344 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 OR13F1Q8NGS4 319 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 GOT1L1Q8NHS2 421 aaPredicted RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 RAB2BQ8WUD1 216 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 RAD51AP1Q96B01 352 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 ARRDC3Q96B67 414 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SH3KBP1Q96B97 665 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 C12orf43Q96C57 262 aaKnown RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 APOL4Q9BPW4 351 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 HDAC8Q9BY41 377 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 MTG2Q9H4K7 406 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 REEP1Q9H902 201 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 MYNNQ9NPC7 610 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 DMRT3Q9NQL9 472 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 AHSPQ9NZD4 102 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 KIF17Q9P2E2 1029 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 WBP11Q9Y2W2 641 aaKnown RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 HCFC2Q9Y5Z7 792 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 MTCH2Q9Y6C9 303 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 CUL9Q8IWT3 2517 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 C1orf226A1L170 272 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SPINT1O43278 529 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SUV39H1O43463 412 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 FKBP9O95302 570 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 ELK4P28324 431 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 PCSK6P29122 969 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 PDHA2P29803 388 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 IRS1P35568 1242 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 CXCR4P61073 352 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 ARHGAP19Q14CB8 494 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 CYP2A13Q16696 494 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 HKDC1Q2TB90 917 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 NXPE4Q6UWF7 544 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 LCTLQ6UWM7 567 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 ADAMTSL4Q6UY14 1074 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 PDZD3Q86UT5 571 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 C12orf40Q86WS4 652 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 PTOV1Q86YD1 416 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 DCUN1D3Q8IWE4 304 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 C10orf111Q8N326 155 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms