RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 DPYSL5Q9BPU6 564 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 REXO4Q9GZR2 422 aaKnown RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 ALG2Q9H553 416 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ANKHQ9HCJ1 492 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 GPR45Q9Y5Y3 372 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 PRSS51A0A1B0GVH4 220 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 H7BY64 318 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ZNF195O14628 629 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ZSCAN9O15535 394 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 DEAF1O75398 565 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 LRATO95237 230 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ACADSP16219 412 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 GPX3P22352 226 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 MLLT3P42568 568 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 MANFP55145 182 aaKnown RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 CYP4F3Q08477 520 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 SLC5A12Q1EHB4 618 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ZC3H14Q6PJT7 736 aaKnown RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 MAVSQ7Z434 540 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 CYP4Z1Q86W10 505 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 KRT73Q86Y46 540 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 HMGCLL1Q8TB92 370 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 PRAP1Q96NZ9 151 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 HBEGFQ99075 208 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 CD180Q99467 661 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 DPH7Q9BTV6 452 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 BDH2Q9BUT1 245 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 EBPLQ9BY08 206 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ACTR10Q9NZ32 417 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 IKZF3Q9UKT9 509 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 FAF1Q9UNN5 650 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 SAMD4AQ9UPU9 718 aaKnown RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 PCDHGB3Q9Y5G1 929 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ALPK3Q96L96 1907 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 IGHV1OR15-9A0A0B4J2B8 117 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 BLACEA4D250 179 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 OR6C74A6NCV1 312 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 TMEM202A6NGA9 273 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 SPINT1O43278 529 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 CHRM5P08912 532 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 MESP2Q0VG99 397 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 TRIP10Q15642 601 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 TBCELQ5QJ74 424 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 Q6ZS52 159 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 CLHC1Q8NHS4 586 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 EME1Q96AY2 570 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 BIRC7Q96CA5 298 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 WDR34Q96EX3 536 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 FOXQ1Q9C009 403 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 MYNNQ9NPC7 610 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 AP1M2Q9Y6Q5 423 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 RNF103-CHMP3A0A140T963 221 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ELOVL7A1L3X0 281 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 CLDN4O14493 209 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ERI3O43414 337 aaKnown RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 LATO43561 262 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 SH3BGRLO75368 114 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 CER1O95813 267 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 XRCC1P18887 633 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 PRDX3P30048 256 aaKnown RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 HNRNPH1P31943 449 aaKnown RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 DIO3P55073 304 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ACTR3P61158 418 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 LIPEQ05469 1076 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 PCDH1Q08174 1060 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 RCAN2Q14206 197 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ALG11Q2TAA5 492 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 UGT3A2Q3SY77 523 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 TCTE1Q5JU00 501 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 MANEAQ5SRI9 462 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 DNAJC14Q6Y2X3 702 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 LAS2Q8IYD9 372 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 MFSD9Q8NBP5 474 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 SLC7A6OSQ96CW6 309 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 OTUB1Q96FW1 271 aaPredicted RBP8.05□□□□□ -1.12
USP54-215ENST00000497106 YIPF2Q9BWQ6 316 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 ACPTQ9BZG2 426 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 XKR8Q9H6D3 395 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 RUBCNLQ9H714 662 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 CALML5Q9NZT1 146 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 SNX8Q9Y5X2 465 aa8.05□□□□□ -1.12
USP54-215ENST00000497106 SPTY2D1-AS1A0A0U1RR47 76 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 SCAMP2O15127 329 aaKnown RBP8.04□□□□□ -1.12
USP54-215ENST00000497106 AQP9O43315 295 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 SOX30O94993 753 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 EIF2S1P05198 315 aaKnown RBP8.04□□□□□ -1.12
USP54-215ENST00000497106 POLR2CP19387 275 aaPredicted RBP8.04□□□□□ -1.12
USP54-215ENST00000497106 RPS6KA3P51812 740 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 MTTPP55157 894 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 ZP2Q05996 745 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 SIGLEC14Q08ET2 396 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 TUBB3Q13509 450 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 GCNT6Q5T4J0 391 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 PLXDC1Q8IUK5 500 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 EID3Q8N140 333 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 FIG4Q92562 907 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 GFM2Q969S9 779 aaKnown RBP8.04□□□□□ -1.12
USP54-215ENST00000497106 PDXPQ96GD0 296 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 SLC6A18Q96N87 628 aa8.04□□□□□ -1.12
USP54-215ENST00000497106 LGR4Q9BXB1 951 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms