RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 TOR1AIP1Q5JTV8 583 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 PSAPL1Q6NUJ1 521 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 NOTUMQ6P988 496 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 C9orf62Q8N4C0 152 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 MARVELD3Q96A59 401 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 ZFP42Q96MM3 310 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 QRFPRQ96P65 431 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 PCDHGA2Q9Y5H1 932 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 KCNE2Q9Y6J6 123 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 DNAH12Q6ZR08 3092 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 UPK3BL1B0FP48 263 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 UPK3BL2E5RIL1 263 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 CLIC1O00299 241 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 AP2A2O94973 939 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 ENGP17813 658 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 ALFQ53S48 1182 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.3□□□□□ -0.6
HDAC4-210ENST00000493582 MARCH8Q5T0T0 291 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 UPRTQ96BW1 309 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 WDFY2Q96P53 400 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 CDCA4Q9BXL8 241 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 SPATC1LQ9H0A9 340 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 ZNF408Q9H9D4 720 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 PCDHGB3Q9Y5G1 929 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 TNFRSF11BO00300 401 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 GPR182O15218 404 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 PDE9AO76083 593 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 NUDT7P0C024 238 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 PSMA1P25786 263 aaKnown RBP11.3□□□□□ -0.6
HDAC4-210ENST00000493582 CRYBB2P43320 205 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 MAP2K3P46734 347 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 RPS14P62263 151 aaKnown RBP11.3□□□□□ -0.6
HDAC4-210ENST00000493582 HNRNPA0Q13151 305 aaKnown RBP11.3□□□□□ -0.6
HDAC4-210ENST00000493582 MAD2L1Q13257 205 aaPredicted RBP11.3□□□□□ -0.6
HDAC4-210ENST00000493582 MAB21L1Q13394 359 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 PPIGQ13427 754 aaKnown RBP eCLIP11.3□□□□□ -0.69e-9■■□□□ 13.1
HDAC4-210ENST00000493582 STK11Q15831 433 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 CTSL3PQ5NE16 218 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 ZNF621Q6ZSS3 439 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 CBLL1Q75N03 491 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 ZNF680Q8NEM1 530 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 DNAJA4Q8WW22 397 aaPredicted RBP11.3□□□□□ -0.6
HDAC4-210ENST00000493582 TMEM203Q969S6 136 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 ZBED6CLQ96FA7 236 aaPredicted RBP11.3□□□□□ -0.6
HDAC4-210ENST00000493582 RETREG1Q9H6L5 497 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 PPT2Q9UMR5 302 aa11.3□□□□□ -0.6
HDAC4-210ENST00000493582 PIN4Q9Y237 131 aaKnown RBP11.3□□□□□ -0.6
HDAC4-210ENST00000493582 DOCK1Q14185 1865 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 LINC00862A6NCI5 91 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 MYL12BO14950 172 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 FABP7O15540 132 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 NAT2P11245 290 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 MYL12AP19105 171 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 PER3P56645 1201 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 RRAS2P62070 204 aaPredicted RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 CACNB2Q08289 660 aaPredicted RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 MRPL28Q13084 256 aaKnown RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 WSCD2Q2TBF2 565 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 MSANTD2Q6P1R3 559 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 TEX261Q6UWH6 196 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 C16orf62Q7Z3J2 963 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 PTOV1Q86YD1 416 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 DENND6BQ8NEG7 585 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 OR10G2Q8NGC3 310 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 CREB3L4Q8TEY5 395 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 TOE1Q96GM8 510 aaKnown RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 HACL1Q9UJ83 578 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 U3KQ87 197 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 TTC3P53804 2025 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 LOC102723532A0A0G2JNH3 316 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 FAM240BA0A1B0GVZ2 78 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 CA12O43570 354 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 PLOD3O60568 738 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 NBNO60934 754 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 MTRF1O75570 445 aaKnown RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 IGLV3-25P01717 112 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 HOXB9P17482 250 aaPredicted RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 OR1E2P47887 323 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 MLLT6P55198 1093 aaPredicted RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 DBPQ10586 325 aaPredicted RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 EIF4EBP2Q13542 120 aaPredicted RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 PTPRRQ15256 657 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 PCBP2Q15366 365 aaKnown RBP eCLIP11.29□□□□□ -0.62e-6■■■■■ 27.4
HDAC4-210ENST00000493582 CYP27C1Q4G0S4 372 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 LCN1P1Q5VSP4 162 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 TSEN54Q7Z6J9 526 aaKnown RBP11.29□□□□□ -0.6
HDAC4-210ENST00000493582 RASAL3Q86YV0 1011 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 GDPD1Q8N9F7 314 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 OR9Q2Q8NGE9 314 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 LHFPL5Q8TAF8 219 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 SPPL2AQ8TCT8 520 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 MAL2Q969L2 176 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 EPYCQ99645 322 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 TM9SF2Q99805 663 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 CRISPLD1Q9H336 500 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 ELOVL2Q9NXB9 296 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 ACTL7AQ9Y615 435 aa11.29□□□□□ -0.6
HDAC4-210ENST00000493582 FFAR2O15552 330 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 GLUD1P00367 558 aa11.28□□□□□ -0.6
HDAC4-210ENST00000493582 SCG5P05408 212 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms