RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 NUP160Q12769 1436 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 KIAA1107Q9UPP5 1409 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 NUP155O75694 1391 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 RAB3GAP2Q9H2M9 1393 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 GRIN2DO15399 1336 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SF3B1O75533 1304 aaKnown RBP eCLIP4.06□□□□□ -1.761e-9■■■■■ 99.9
BRCA1-220ENST00000492859 SPATA31A5Q5VU36 1347 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SPATA31A7Q8IWB4 1347 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 RPTORQ8N122 1335 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 MYBBP1AQ9BQG0 1328 aaKnown RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SALL1Q9NSC2 1324 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 LOC100509620A0A075B734 347 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 C13orf42A0A1B0GVH6 325 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 A0A1B0GVM2 712 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 FAM90A8PA6NJQ4 464 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SMIM23A6NLE4 172 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 OR2AT4A6NND4 320 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 EFCAB8A8MWE9 144 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 TEX22C9J3V5 150 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 J3KTA2 159 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CCSO14618 274 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 KLF11O14901 512 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SLC31A2O15432 143 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 DHHO43323 396 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 DUX1O43812 170 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PRICKLE3O43900 615 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 NME2P1O60361 137 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 BCAS1O75363 584 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 UPK3AO75631 287 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 TRUB2O95900 331 aaKnown RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 BCL10O95999 233 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PGK1P00558 417 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ICAM1P05362 532 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CELA3BP08861 270 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 FAM90A13PP0C7W8 464 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 FAM90A24PP0C7X0 464 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SLC35E2BP0CK96 405 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SLC35E2P0CK97 266 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PNMTP11086 282 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PNLIPP16233 465 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CEBPBP17676 345 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 MALP21145 153 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 GSTM3P21266 225 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SLC6A2P23975 617 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PPP2R1AP30153 589 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 TIA1P31483 386 aaKnown RBP eCLIP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CSF2RBP32927 897 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CD68P34810 354 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ARL1P40616 181 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 HCAR3P49019 387 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 STK19P49842 368 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SUOXP51687 545 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 OR2B6P58173 313 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ATP6V0D1P61421 351 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ERVS71-1P61550 626 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ARF6P62330 175 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PSPHP78330 225 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CTBSQ01459 385 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 FLI1Q01543 452 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SLC6A3Q01959 620 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 HSF2Q03933 536 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 TARDBPQ13148 414 aaKnown RBP eCLIP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 RUNX2Q13950 521 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ZNHIT3Q15649 155 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 STXBP2Q15833 593 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 EIF2S3LQ2VIR3 472 aaKnown RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 EPHA10Q5JZY3 1008 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ACER2Q5QJU3 275 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PDSS1Q5T2R2 415 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ZNF618Q5T7W0 954 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 C20orf194Q5TEA3 1177 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 DCAF12L1Q5VU92 463 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 IRAK1BP1Q5VVH5 260 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 LIPJQ5W064 366 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 DENND1BQ6P3S1 775 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 TMEM81Q6P7N7 255 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 MED25Q71SY5 747 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 GPR141Q7Z602 305 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PATL1Q86TB9 770 aaKnown RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 FAM35AQ86V20 835 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PAQR7Q86WK9 346 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 C12orf40Q86WS4 652 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 KMT5CQ86Y97 462 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ZNF280BQ86YH2 543 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 IRF2BP1Q8IU81 584 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 CLEC10AQ8IUN9 316 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SIAH3Q8IW03 269 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 ADHFE1Q8IWW8 467 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 DMRTC2Q8IXT2 367 aaPredicted RBP4.06□□□□□ -1.76
BRCA1-220ENST00000492859 PQLC3Q8N755 202 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 C12orf29Q8N999 325 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 FAM71CQ8NEG0 241 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 DNERQ8NFT8 737 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 RHEBL1Q8TAI7 183 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 NANPQ8TBE9 248 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 RHBDD1Q8TEB9 315 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SLC35F5Q8WV83 523 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SMPDL3AQ92484 453 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 GTF2H4Q92759 462 aa4.06□□□□□ -1.76
BRCA1-220ENST00000492859 SEMA4DQ92854 862 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms