RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	KRT12	Q99456	494 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	HNRNPAB	Q99729	332 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	TDRD1	Q9BXT4	1180 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	BARHL1	Q9BZE3	327 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	WDR13	Q9H1Z4	485 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	SRD5A3	Q9H8P0	318 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	IL1RAPL2	Q9NP60	686 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	PANK4	Q9NVE7	773 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	TBC1D13	Q9NVG8	400 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	INTS10	Q9NVR2	710 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLC12A6	Q9UHW9	1150 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	NOCT	Q9UK39	431 aa	Known RBP	3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	FBXL5	Q9UKA1	691 aa		3.34	□□□□□ -1.87
PTCD3-209	ENST00000472044	C15orf61	A6NNL5	157 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	ZNF263	O14978	683 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	CTDSPL	O15194	276 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	GRID2	O43424	1007 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	SP9	P0CG40	484 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	PRKAR1A	P10644	381 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	CYP2A7	P20853	494 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	SSTR1	P30872	391 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	DCDC1	P59894	354 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	TRA2A	Q13595	282 aa	Known RBP eCLIP	3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	TAB1	Q15750	504 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	PWWP2B	Q6NUJ5	590 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	PODNL1	Q6PEZ8	512 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	BHLHB9	Q6PI77	547 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044		Q6ZSR9	355 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	PIGW	Q7Z7B1	504 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	HOGA1	Q86XE5	327 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	CLYBL	Q8N0X4	340 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	NUP93	Q8N1F7	819 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	OR4C15	Q8NGM1	316 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	CTCFL	Q8NI51	663 aa	Predicted RBP	3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	MAPK15	Q8TD08	544 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	ARHGAP45	Q92619	1136 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	C17orf62	Q9BQA9	187 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	ALKBH7	Q9BT30	221 aa	Predicted RBP	3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	C5orf66	Q9H5L9	145 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	FGF22	Q9HCT0	170 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	GPR173	Q9NS66	373 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	TXLNG	Q9NUQ3	528 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	EXOC1	Q9NV70	894 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	TMEM161A	Q9NX61	479 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	MIS18A	Q9NYP9	233 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	HBS1L	Q9Y450	684 aa	Known RBP	3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	PFAS	O15067	1338 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	NPHP3	Q7Z494	1330 aa		3.33	□□□□□ -1.88
PTCD3-209	ENST00000472044	TRBV4-1	A0A0J9YWV2	114 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	ANTXRL	A6NF34	631 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044		H3BMM5	538 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	CYTIP	O60759	359 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	C8orf89	P0DMQ9	161 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	DLAT	P10515	647 aa	Known RBP	3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	HLA-F	P30511	346 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	SOX3	P41225	446 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	KHK	P50053	298 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	PAX9	P55771	341 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	SNRPD1	P62314	119 aa	Known RBP	3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	CETN1	Q12798	172 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	PPA1	Q15181	289 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	CCDC158	Q5M9N0	1113 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	OR4C11	Q6IEV9	310 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	ADAM5	Q6NVV9	412 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	COX8C	Q7Z4L0	72 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	PTAR1	Q7Z6K3	402 aa	Predicted RBP	3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	RAB42	Q8N4Z0	105 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	TMEM99	Q8N816	258 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	WDSUB1	Q8N9V3	476 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	OR5T2	Q8NGG2	359 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	SMAP2	Q8WU79	429 aa	Predicted RBP	3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	NR4A3	Q92570	626 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	LURAP1	Q96LR2	239 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	NECTIN4	Q96NY8	510 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	RASL10B	Q96S79	203 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	PRMT1	Q99873	361 aa	Known RBP	3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	NYX	Q9GZU5	481 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	MRPL17	Q9NRX2	175 aa	Known RBP	3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	PDRG1	Q9NUG6	133 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	PLCXD1	Q9NUJ7	323 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	CNIH4	Q9P003	139 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	MDFIC	Q9P1T7	246 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	SELENOK	Q9Y6D0	94 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	KIF26B	Q2KJY2	2108 aa		3.32	□□□□□ -1.88
PTCD3-209	ENST00000472044	C13orf42	A0A1B0GVH6	325 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044		A0A1W2PR80	420 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	LRRD1	A4D1F6	860 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	ANKDD1B	A6NHY2	528 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	NME6	O75414	186 aa	Predicted RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	SAP30	O75446	220 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	CEACAM4	O75871	244 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	GLCE	O94923	617 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	MYOG	P15173	224 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	AADAC	P22760	399 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	RPP38	P78345	283 aa	Known RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	AKAP17A	Q02040	695 aa	Known RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	HYAL1	Q12794	435 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	HNRNPD	Q14103	355 aa	Known RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	DUSP5	Q16690	384 aa		3.31	□□□□□ -1.88

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