RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 SNX16P57768 344 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 SNAP25P60880 206 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 CDR2Q01850 454 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 ORC2Q13416 577 aaPredicted RBP4.82□□□□□ -1.64
CCDC39-202ENST00000471307 KRT33BQ14525 404 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 NONOQ15233 471 aaKnown RBP eCLIP4.82□□□□□ -1.64
CCDC39-202ENST00000471307 DEFB115Q30KQ5 88 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 USH1GQ495M9 461 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 FAM98BQ52LJ0 330 aaKnown RBP4.82□□□□□ -1.64
CCDC39-202ENST00000471307 MDH1BQ5I0G3 518 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 GRHL3Q8TE85 626 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 SERINC2Q96SA4 455 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 BARD1Q99728 777 aaKnown RBP4.82□□□□□ -1.64
CCDC39-202ENST00000471307 EGFL8Q99944 293 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 SRSF8Q9BRL6 282 aaKnown RBP4.82□□□□□ -1.64
CCDC39-202ENST00000471307 SYT11Q9BT88 431 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 TEX13BQ9BXU2 312 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 VN1R1Q9GZP7 353 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 RAVER2Q9HCJ3 691 aaKnown RBP4.82□□□□□ -1.64
CCDC39-202ENST00000471307 SEPT11Q9NVA2 429 aaKnown RBP4.82□□□□□ -1.64
CCDC39-202ENST00000471307 NKIRAS2Q9NYR9 191 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 ABT1Q9ULW3 272 aaKnown RBP4.82□□□□□ -1.64
CCDC39-202ENST00000471307 LOC285556D6RIA3 1793 aa4.82□□□□□ -1.64
CCDC39-202ENST00000471307 ELP1O95163 1332 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 IGLV7-46A0A075B6I9 117 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 LOC101059948A0A1B0GTJ6 334 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 KHDRBS3O75525 346 aaKnown RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 CDC123O75794 336 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 YEATS4O95619 227 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 MMP9P14780 707 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 CA6P23280 308 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 SP100P23497 879 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 KRT20P35900 424 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 RAD52P43351 418 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 ARSEP51690 589 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 ARF3P61204 181 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 LMO4P61968 165 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 CCNA1P78396 465 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 ARF1P84077 181 aaKnown RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 NR1D2Q14995 579 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 PSMD6Q15008 389 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 DLG2Q15700 870 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 SNRNP48Q6IEG0 339 aaKnown RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 FAM173BQ6P4H8 233 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 ZNF843Q8N446 348 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 BMPERQ8N8U9 685 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 TMEM178AQ8NBL3 297 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 GPRC5AQ8NFJ5 357 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 OR2T11Q8NH01 316 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 MOSPD2Q8NHP6 518 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 TBCKQ8TEA7 893 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 RNF128Q8TEB7 428 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 HPSE2Q8WWQ2 592 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 SUSD6Q92537 303 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 DYRK2Q92630 601 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 OR6C1Q96RD1 312 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 PARK7Q99497 189 aaKnown RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 CHCHD6Q9BRQ6 235 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 FGFBP2Q9BYJ0 223 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 SPATC1LQ9H0A9 340 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 P2RY12Q9H244 342 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 ARRDC1-AS1Q9H2J1 176 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 SMARCAD1Q9H4L7 1026 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 INTS9Q9NV88 658 aaKnown RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 MORF4L1Q9UBU8 362 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 ZDHHC2Q9UIJ5 367 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 GRIP1Q9Y3R0 1128 aa4.81□□□□□ -1.64
CCDC39-202ENST00000471307 COL11A1P12107 1806 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-202ENST00000471307 MYH15Q9Y2K3 1946 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 PFASO15067 1338 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 LNP1A1A4G5 178 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 GOLGA6L4A6NEF3 574 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 LAD1O00515 517 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 RNASEH1O60930 286 aaKnown RBP4.8□□□□□ -1.64
CCDC39-202ENST00000471307 CNMDO75829 334 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 RPN1P04843 607 aaKnown RBP4.8□□□□□ -1.64
CCDC39-202ENST00000471307 VPREB1P12018 145 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 GCFC2P16383 781 aaKnown RBP4.8□□□□□ -1.64
CCDC39-202ENST00000471307 SLC6A12P48065 614 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 HERV-K104P61576 105 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 STK38Q15208 465 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 UBE2SQ16763 222 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 LCE3CQ5T5A8 94 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 CYP4A22Q5TCH4 519 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 MOXD1Q6UVY6 613 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 Q6ZSR9 355 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 TTC39CQ8N584 583 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 ANKRD52Q8NB46 1076 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 LINC00301Q8NCQ3 95 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 ZNRF4Q8WWF5 429 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 CRYGNQ8WXF5 182 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 MAGED4Q96JG8 741 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 USP28Q96RU2 1077 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 VGLL1Q99990 258 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 SYT15Q9BQS2 421 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 TRAF4Q9BUZ4 470 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-202ENST00000471307 AP1M1Q9BXS5 423 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 LAT2Q9GZY6 243 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 KCNK15Q9H427 330 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 RIPK3Q9Y572 518 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms