RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 C9J4A7 227 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 UBXN8O00124 270 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 PDPK1O15530 556 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 NRP2O60462 931 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 CLPXO76031 633 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 HLA-EP13747 358 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 F8A1P23610 371 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 POU1F1P28069 291 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 NTSP30990 170 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 CLK3P49761 638 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 YPEL5P62699 121 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 CSTF1Q05048 431 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 GRIK2Q13002 908 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 ZNF234Q14588 700 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 PTPRCAPQ14761 206 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 AP5B1Q2VPB7 878 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SPESP1Q6UW49 350 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 PDSS2Q86YH6 399 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SPEM1Q8N4L4 309 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SIDT2Q8NBJ9 832 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 RPLP0P6Q8NHW5 317 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 METTL6Q8TCB7 284 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 RIOK2Q9BVS4 552 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 P2RY12Q9H244 342 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SLC6A15Q9H2J7 730 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 DNAJC11Q9NVH1 559 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 ERVK-11Q9UQG0 969 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 WASF2Q9Y6W5 498 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 A0A1W2PP55 124 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 HTR3EA5X5Y0 456 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SLC28A1O00337 649 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SDHDO14521 159 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SLC16A5O15375 505 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 MBTPS2O43462 519 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 KCNH1O95259 989 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 MT-CO1P00395 513 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 NR2F6P10588 404 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 ARSAP15289 507 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 GNPDA1P46926 289 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SMIM11AP58511 58 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 CREB5Q02930 508 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 STX4Q12846 297 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SP140Q13342 867 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 MAVSQ7Z434 540 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 R3HCC1LQ7Z5L2 792 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 SLC44A2Q8IWA5 706 aaPredicted RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 SVOPLQ8N434 492 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 FAM46DQ8NEK8 389 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 MAPK15Q8TD08 544 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 TSPEARQ8WU66 669 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 ECHDC3Q96DC8 303 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 HSPBAP1Q96EW2 488 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 PPP3R2Q96LZ3 170 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 OR52B2Q96RD2 323 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 UHRF1Q96T88 793 aaPredicted RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 SLC22A4Q9H015 551 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 ZBTB26Q9HCK0 441 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SH3BP4Q9P0V3 963 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 IKZF3Q9UKT9 509 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 FZD4Q9ULV1 537 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 RABL2BQ9UNT1 228 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 PCDHGA2Q9Y5H1 932 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 ANAPC1Q9H1A4 1944 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 TRBV5-4A0A0C4DH59 114 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 K7ERQ8 282 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 KLK8O60259 260 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 ZNF806P0C7X5 589 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 PAICSP22234 425 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 PPP2R1BP30154 601 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SRP54P61011 504 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 STXBP1P61764 594 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 RHAGQ02094 409 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 ABRQ12979 859 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 LRP8Q14114 963 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 KANK2Q63ZY3 851 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 TMPRSS11AQ6ZMR5 421 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 KCTD8Q6ZWB6 473 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 HPS6Q86YV9 775 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 CFAP206Q8IYR0 622 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 DSELQ8IZU8 1212 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 WFDC5Q8TCV5 224 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 CD200R1Q8TD46 325 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 TRUB1Q8WWH5 349 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 ROPN1LQ96C74 230 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 PHF12Q96QT6 1004 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 SLC17A9Q9BYT1 436 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 WDR55Q9H6Y2 383 aaPredicted RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 MVB12BQ9H7P6 319 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 KCNK12Q9HB15 430 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 MRTO4Q9UKD2 239 aaKnown RBP7.42□□□□□ -1.22
USP54-210ENST00000466048 ABCG2Q9UNQ0 655 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 PDE10AQ9Y233 779 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 INVSQ9Y283 1065 aa7.42□□□□□ -1.22
USP54-210ENST00000466048 H0YJX3 145 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CLDN4O14493 209 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 SMAD6O43541 496 aaKnown RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 MMP20O60882 483 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 NIPSNAP2O75323 286 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 RPS17P08708 135 aaKnown RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 SLC35G6P0C7Q6 338 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms