RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TOR4AQ9NXH8 423 aa11.25□□□□□ -0.61
NPHP4-204ENST00000460696 RHCGQ9UBD6 479 aa11.25□□□□□ -0.61
NPHP4-204ENST00000460696 GULP1Q9UBP9 304 aa11.25□□□□□ -0.61
NPHP4-204ENST00000460696 AASSQ9UDR5 926 aa11.25□□□□□ -0.61
NPHP4-204ENST00000460696 CLDN25C9JDP6 229 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 AIREO43918 545 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 IGLV3-27P01718 113 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 JUPP14923 745 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CD36P16671 472 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CDH3P22223 829 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 RPS3P23396 243 aaKnown RBP eCLIP11.24□□□□□ -0.61
NPHP4-204ENST00000460696 HLCSP50747 726 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 ARMC4Q5T2S8 1044 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 GAREM2Q75VX8 874 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 HEATR4Q86WZ0 1026 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 GPR65Q8IYL9 337 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 SLC43A3Q8NBI5 491 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 WDR36Q8NI36 951 aaKnown RBP11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CEP295NLQ96MC4 621 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 IL4I1Q96RQ9 567 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 YIPF4Q9BSR8 244 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 C11orf16Q9NQ32 467 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 SEMA3GQ9NS98 782 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 TEKT2Q9UIF3 430 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CA14Q9ULX7 337 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 TSC22D4Q9Y3Q8 395 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 LYVE1Q9Y5Y7 322 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 SDC1P18827 310 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CR2P20023 1033 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 SLC5A2P31639 672 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CLCNKAP51800 687 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CDK6Q00534 326 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 TFF2Q03403 129 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 HEPACAMQ14CZ8 416 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 INAQ16352 499 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CYBRD1Q53TN4 286 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 SPIN4Q56A73 249 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF805Q5CZA5 627 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 ARMC6Q6NXE6 501 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 TMIGD1Q6UXZ0 262 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 C16orf62Q7Z3J2 963 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 ITM2CQ9NQX7 267 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 OLAHQ9NV23 265 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 TRNAU1APQ9NX07 287 aaKnown RBP11.24□□□□□ -0.61
NPHP4-204ENST00000460696 EHD3Q9NZN3 535 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 FBXW2Q9UKT8 454 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 ACSL6Q9UKU0 697 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 SLC9A8Q9Y2E8 581 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 RBBP6Q7Z6E9 1792 aaKnown RBP11.24□□□□□ -0.61
NPHP4-204ENST00000460696 FADS2P1A8MWK0 482 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CBFA2T3O75081 653 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 SERPINI2O75830 405 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 MAPK9P45984 424 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 SUOXP51687 545 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 PTPN5P54829 565 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 CD47Q08722 323 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 TIMM50Q3ZCQ8 353 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 HSD11B1LQ7Z5J1 315 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 OOSP2Q86WS3 158 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 ARMC8Q8IUR7 673 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 METTL25Q8N6Q8 603 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 OR10G6Q8NH81 332 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 HTRA1Q92743 480 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 FOXJ1Q92949 421 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 C12orf66Q96MD2 445 aa11.24□□□□□ -0.61
NPHP4-204ENST00000460696 TSPAN19P0C672 248 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 ZDHHC11BP0C7U3 371 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 TNFRSF1BP20333 461 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 POLR2IP36954 125 aaKnown RBP11.23□□□□□ -0.61
NPHP4-204ENST00000460696 DCTP40126 519 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 HUS1BQ8NHY5 278 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 RAB8BQ92930 207 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 SLCO4A1Q96BD0 722 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 PHPT1Q9NRX4 125 aaPredicted RBP11.23□□□□□ -0.61
NPHP4-204ENST00000460696 ELOVL2Q9NXB9 296 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 SCN4AP35499 1836 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 FXYD1O00168 92 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 GUCY1B2O75343 617 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 MAP2K4P45985 399 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 GSTM5P46439 218 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 SP140Q13342 867 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 CARM1Q86X55 608 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 CLIP4Q8N3C7 705 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 MFSD2AQ8NA29 543 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 COL21A1Q96P44 957 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 CCDC3Q9BQI4 270 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 KAT8Q9H7Z6 458 aaKnown RBP11.23□□□□□ -0.61
NPHP4-204ENST00000460696 ZCCHC3Q9NUD5 404 aaKnown RBP11.23□□□□□ -0.61
NPHP4-204ENST00000460696 SPACA6W5XKT8 324 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 RTCAO00442 366 aaKnown RBP11.23□□□□□ -0.61
NPHP4-204ENST00000460696 AGXTP21549 392 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 KELP23276 732 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 IHHQ14623 411 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 LIPJQ5W064 366 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 RNF130Q86XS8 419 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 CBARPQ8N350 705 aaPredicted RBP11.23□□□□□ -0.61
NPHP4-204ENST00000460696 USP7Q93009 1102 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 HLA-CQ95604 372 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 COX4I2Q96KJ9 171 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF583Q96ND8 569 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms