RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 TMEM9BQ9NQ34 198 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 VTI1BQ9UEU0 232 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 STK38LQ9Y2H1 464 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 HCN4Q9Y3Q4 1203 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 ENTPD2Q9Y5L3 495 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 CFAP54Q96N23 3096 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 WDFY3Q8IZQ1 3526 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 CNOT1A5YKK6 2376 aaKnown RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 PTPRZ1P23471 2315 aaPredicted RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 A0A0J9YVX5 310 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 E9PBE3 544 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 SAP18O00422 153 aaKnown RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 KLHL41O60662 606 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 LDOC1O95751 146 aaPredicted RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 B3GALT4O96024 378 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 TGFB1P01137 390 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 RPLP0P05388 317 aaKnown RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 ALDOCP09972 364 aaKnown RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 CDH3P22223 829 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 GRK6P43250 576 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 SCTRP47872 440 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 PPM1FP49593 454 aaPredicted RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 CLDN6P56747 220 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 HYAL2Q12891 473 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 SUZ12Q15022 739 aaKnown RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 DEFB110Q30KQ9 67 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 RFTN2Q52LD8 501 aaPredicted RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 SNAP47Q5SQN1 464 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 ARMC6Q6NXE6 501 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 TRIM46Q7Z4K8 759 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 VN1R4Q7Z5H5 301 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 SHISA5Q8N114 240 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 BAHD1Q8TBE0 780 aaPredicted RBP10.51□□□□□ -0.73
SCN9A-205ENST00000454569 CREB3L4Q8TEY5 395 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 SLC22A18Q96BI1 424 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 APIPQ96GX9 242 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 AIF1LQ9BQI0 150 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 RAB33BQ9H082 229 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 OR51B5Q9H339 312 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 KLHL31Q9H511 634 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 ELOVL6Q9H5J4 265 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 HEY2Q9UBP5 337 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 EPHA6Q9UF33 1036 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 SNX7Q9UNH6 387 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 SNX6Q9UNH7 406 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 ARL2BPQ9Y2Y0 163 aa10.51□□□□□ -0.73
SCN9A-205ENST00000454569 TRBC2A0A5B9 178 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 PROB1E7EW31 1015 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 SLCO1B7G3V0H7 640 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 LSM1O15116 133 aaKnown RBP10.5□□□□□ -0.73
SCN9A-205ENST00000454569 P2RX6O15547 441 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 FLRT2O43155 660 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 KLHL18O94889 574 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 KRT6AP02538 564 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 C9P02748 559 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 KRT6BP04259 564 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 PRR35P0CG20 571 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 PNLIPP16233 465 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 GABRA4P48169 554 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 KRT6CP48668 564 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 SEPHS1P49903 392 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 DMTNQ08495 405 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 KCNAB1Q14722 419 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 KIAA0040Q15053 153 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 GALNTL6Q49A17 601 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 AASDHQ4L235 1098 aaPredicted RBP10.5□□□□□ -0.73
SCN9A-205ENST00000454569 C6orf136Q5SQH8 315 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 NAXDQ8IW45 347 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 AMER3Q8N944 861 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 AHCYL2Q96HN2 611 aaKnown RBP10.5□□□□□ -0.73
SCN9A-205ENST00000454569 FAR2Q96K12 515 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 OR2A5Q96R48 311 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 F2RL3Q96RI0 385 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 SORBS1Q9BX66 1292 aaKnown RBP10.5□□□□□ -0.73
SCN9A-205ENST00000454569 RHBGQ9H310 441 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 SEMA6CQ9H3T2 930 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 LRRN3Q9H3W5 708 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 NT5DC2Q9H857 520 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 TCF7L2Q9NQB0 619 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 DMRT3Q9NQL9 472 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 STARD5Q9NSY2 213 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 PCDHGA11Q9Y5H2 935 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 KLK4Q9Y5K2 254 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 CEP250Q9BV73 2442 aa10.5□□□□□ -0.73
SCN9A-205ENST00000454569 KNTC1P50748 2209 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 MN1Q10571 1320 aaPredicted RBP10.49□□□□□ -0.73
SCN9A-205ENST00000454569 SERTM1A2A2V5 107 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 TRPC5OSA6NMA1 111 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 ZW10O43264 779 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 DUX1O43812 170 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 CCNDBP1O95273 360 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 CKMT2P17540 419 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 HNRNPH1P31943 449 aaKnown RBP10.49□□□□□ -0.73
SCN9A-205ENST00000454569 DIO3P55073 304 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 GPLD1P80108 840 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 NHLH1Q02575 133 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 TBL3Q12788 808 aaKnown RBP10.49□□□□□ -0.73
SCN9A-205ENST00000454569 IFT88Q13099 833 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 SLC14A1Q13336 389 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 LAPTM5Q13571 262 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms