RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SLC27A4Q6P1M0 643 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ZBTB2Q8N680 514 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ZNF676Q8N7Q3 588 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 TMEM74Q96NL1 305 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ENAMQ9NRM1 1142 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 PHPT1Q9NRX4 125 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 COL5A2P05997 1499 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 CIB4A0PJX0 185 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 INPPL1O15357 1258 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 RNF13O43567 381 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ADH1CP00326 375 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ADAP00813 363 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 RXRBP28702 533 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 HOXC12P31275 282 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 FLI1Q01543 452 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 SSX6Q7RTT6 188 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 BORCS7Q96B45 105 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 LGALS12Q96DT0 336 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 COQ10AQ96MF6 247 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 DPEP2Q9H4A9 486 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 SGK2Q9HBY8 427 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 F8VP50 259 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 JRKO75564 520 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 TP53P04637 393 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 ALPPP05187 535 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 WNT3AP56704 352 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ZER1Q7Z7L7 766 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 TNS4Q8IZW8 715 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 BEST3Q8N1M1 668 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 SOCS4Q8WXH5 440 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 DBNDD1Q9H9R9 158 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 SPTBP11277 2137 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 A0A0J9YVX5 310 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 LRP5LA4QPB2 252 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 AGPSO00116 658 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 IL7RP16871 459 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 OR1G1P47890 313 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 GPX6P59796 221 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 NFATC3Q12968 1075 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 PLD5Q8N7P1 536 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ACSF2Q96CM8 615 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 FCRL5Q96RD9 977 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 B3GNT2Q9NY97 397 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 PLIN4Q96Q06 1357 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 A0A096LPI6 279 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 AURKAO14965 403 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 GPR137BO60478 399 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 EEDO75530 441 aaKnown RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 BTBD16Q32M84 506 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 HIST2H3AQ71DI3 136 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 SLC2A14Q8TDB8 520 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 LRTOMTQ8WZ04 291 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 GPR22Q99680 433 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ELL3Q9HB65 397 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 FAM159BA6NKW6 160 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 WNT9AO14904 365 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 IL1AP01583 271 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 SCARB2Q14108 478 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 IDO2Q6ZQW0 420 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ANKMY1Q9P2S6 941 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 TRAV19A0A0A6YYK7 116 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 PRNPP04156 253 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 IL1R1P14778 569 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 RHCEP18577 417 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 DDX6P26196 483 aaKnown RBP eCLIP6.99□□□□□ -1.29
VPS53-204ENST00000437048 HERV-K104P61576 105 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 SNTB2Q13425 540 aaKnown RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 GTPBP8Q8N3Z3 284 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 ZNF587Q96SQ5 575 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 FXYD6-FXYD2A0A087WZ82 144 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 TTLL13PA6NNM8 815 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 RAB40ALP0C0E4 278 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 PRKAR1BP31321 381 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 CD86P42081 329 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ORC1Q13415 861 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 CBX2Q14781 532 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 C14orf28Q4W4Y0 310 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 RAB40AQ8WXH6 277 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 FEM1AQ9BSK4 669 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 FXYD6Q9H0Q3 95 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 KIAA1522Q9P206 1035 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 PXDNQ92626 1479 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 FAM186AA6NE01 2351 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 RBMS1P29558 406 aaKnown RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 CAP2P40123 477 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 CAV3P56539 151 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 PSPHP78330 225 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 CACNB2Q08289 660 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 PRPF38BQ5VTL8 546 aaKnown RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 TPGS1Q6ZTW0 290 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 CIR1Q86X95 450 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 RASGRP3Q8IV61 690 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ZNF584Q8IVC4 421 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 LSM14AQ8ND56 463 aaKnown RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 OR56B4Q8NH76 319 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ANGPTL6Q8NI99 470 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 SLC35B2Q8TB61 432 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 NTPCRQ9BSD7 190 aaKnown RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 EGFL7Q9UHF1 273 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 BTRCQ9Y297 605 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms