RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TGM7Q96PF1 710 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 CD180Q99467 661 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 TWSG1Q9GZX9 223 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 KLHL25Q9H0H3 589 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 ABCG4Q9H172 646 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 OR51B5Q9H339 312 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 TAGLN3Q9UI15 199 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 PPT2Q9UMR5 302 aa16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 MDC1Q14676 2089 aaKnown RBP16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 RIF1Q5UIP0 2472 aaKnown RBP16.4■□□□□ 0.22
CCDC28B-202ENST00000421922 IGHV1OR21-1A0A087WYE8 117 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 TLCD2A6NGC4 264 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 NPIPB8E9PQR5 432 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 CAPN5O15484 640 aaPredicted RBP16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 NDUFS4O43181 175 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 TNFSF14O43557 240 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 HNRNPCL1O60812 293 aaKnown RBP16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 RASSF9O75901 435 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 CBX6O95503 412 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 SLC35G6P0C7Q6 338 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 ZNF883P0CG24 379 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 PRPS2P11908 318 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 PVRP15151 417 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 PNLIPP16233 465 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 CALB2P22676 271 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 PRDX6P30041 224 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 RASSF2P50749 326 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 MNAT1P51948 309 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 DIO3P55073 304 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 PPP1CAP62136 330 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 MXRA7P84157 204 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 TGM3Q08188 693 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 PDCD4Q53EL6 469 aaKnown RBP16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 PLA2G2CQ5R387 149 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 FAM92BQ6ZTR7 304 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 LIX1Q8N485 282 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 C1orf52Q8N6N3 182 aaKnown RBP16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 ZNF655Q8N720 491 aaPredicted RBP16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 BAHD1Q8TBE0 780 aaPredicted RBP16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 APIPQ96GX9 242 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 ZFYVE21Q9BQ24 234 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 CCDC3Q9BQI4 270 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 SARGQ9BW04 601 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 MS4A8Q9BY19 250 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 MRPL1Q9BYD6 325 aaKnown RBP16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 IRF2BPLQ9H1B7 796 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 ZNF385DQ9H6B1 395 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 C1GALT1Q9NS00 363 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 ARL8BQ9NVJ2 186 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 ASIC5Q9NY37 505 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 PCDHGA4Q9Y5G9 962 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 AP1M2Q9Y6Q5 423 aa16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 ARID1BQ8NFD5 2236 aaPredicted RBP16.39■□□□□ 0.21
CCDC28B-202ENST00000421922 A0A0J9YVX5 310 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 GNG14A0A1W2PPG7 69 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 ARHGAP10A1A4S6 786 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 CAPN14A8MX76 684 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 LCMT2O60294 686 aaKnown RBP16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 SEMA3DO95025 777 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 THRAP10827 490 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 MYF5P13349 255 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 ACPPP15309 386 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 GRK6P43250 576 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 ARL4DP49703 201 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 STXBP1P61764 594 aaKnown RBP16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 CUL3Q13618 768 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 NR1D2Q14995 579 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 KHDRBS2Q5VWX1 349 aaKnown RBP16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 NKAIN2Q5VXU1 208 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 FCRL6Q6DN72 434 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 CYP20A1Q6UW02 462 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 PRR23CQ6ZRP0 262 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 PAGE2Q7Z2X7 111 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 ASPGQ86U10 573 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 TREML1Q86YW5 311 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 C19orf47Q8N9M1 422 aaKnown RBP16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 CDC26Q8NHZ8 85 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 ATOH1Q92858 354 aaPredicted RBP16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 QRFPRQ96P65 431 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 EBPLQ9BY08 206 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 NLNQ9BYT8 704 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 DPY30Q9C005 99 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 BRINP2Q9C0B6 783 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 RAB33BQ9H082 229 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 SYNDIG1Q9H7V2 258 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 SOHLH2Q9NX45 425 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 ZIM2Q9NZV7 527 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 EPHA6Q9UF33 1036 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 KLHL3Q9UH77 587 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 PCDHGB2Q9Y5G2 931 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 KLK4Q9Y5K2 254 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 FAM186AA6NE01 2351 aa16.38■□□□□ 0.21
CCDC28B-202ENST00000421922 URADA6NGE7 173 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 SAP18O00422 153 aaKnown RBP16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 PCDH7O60245 1069 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 SLC22A3O75751 556 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 ETHE1O95571 254 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 G6PDP11413 515 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 COX4I1P13073 169 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 ST6GAL1P15907 406 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms