RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 FAM69BQ5VUD6 431 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 ADNP2Q6IQ32 1131 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 COX15Q7KZN9 410 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 TRABD2AQ86V40 505 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 KCT2Q8NC54 265 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 CAMKVQ8NCB2 501 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 SLC13A3Q8WWT9 602 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 ZBTB9Q96C00 473 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 TM4SF19Q96DZ7 209 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 MOCOSQ96EN8 888 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 WDR34Q96EX3 536 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 PTCD3Q96EY7 689 aaKnown RBP11.88□□□□□ -0.51
SKA1-203ENST00000417656 SLC45A3Q96JT2 553 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 ZIM3Q96PE6 472 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 DPH2Q9BQC3 489 aaPredicted RBP11.88□□□□□ -0.51
SKA1-203ENST00000417656 EFHD1Q9BUP0 239 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 EFCAB11Q9BUY7 163 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 TMEM109Q9BVC6 243 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 CAPS2Q9BXY5 557 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 ROPN1BQ9BZX4 212 aaPredicted RBP11.88□□□□□ -0.51
SKA1-203ENST00000417656 EHD1Q9H4M9 534 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 ROPN1Q9HAT0 212 aaPredicted RBP11.88□□□□□ -0.51
SKA1-203ENST00000417656 SLC22A11Q9NSA0 550 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 ZFP69BQ9UJL9 534 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 PCDHGA6Q9Y5G7 932 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 MAU2Q9Y6X3 613 aa11.88□□□□□ -0.51
SKA1-203ENST00000417656 CFAP47Q6ZTR5 3102 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 ZFHX4Q86UP3 3567 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 A0A0A6YYC8 382 aaPredicted RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 ZNF891A8MT65 544 aaPredicted RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 I3L1I5 382 aaPredicted RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 K7ENP7 123 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 COPEO14579 308 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 CNOT3O75175 753 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 H2AFYO75367 372 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 RPS17P08708 135 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 PRKAR1AP10644 381 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 AHRP35869 848 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 FOXL2P58012 376 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 RPS15P62841 145 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 GTF2H2Q13888 395 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 ATP1A1-AS1Q5TC04 95 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 GARNL3Q5VVW2 1013 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 MLIPQ5VWP3 458 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 TMEM214Q6NUQ4 689 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 GTF2H2CQ6P1K8 395 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 INO80CQ6PI98 192 aaPredicted RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 TMIGD1Q6UXZ0 262 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 RPS27LQ71UM5 84 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 PRSS41Q7RTY9 318 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 SRRM1Q8IYB3 904 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 KRT78Q8N1N4 520 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 APOPT1Q96IL0 206 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 NSUN5Q96P11 429 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 DRC3Q9H069 523 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 C12orf65Q9H3J6 166 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 PRORYQ9H606 182 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 ACSS2Q9NR19 701 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 IFT80Q9P2H3 777 aaPredicted RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 CTSFQ9UBX1 484 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 DCDC2Q9UHG0 476 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 GPN3Q9UHW5 284 aaPredicted RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 KCND3Q9UK17 655 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 PCTPQ9UKL6 214 aa11.87□□□□□ -0.51
SKA1-203ENST00000417656 TNPO3Q9Y5L0 923 aaKnown RBP11.87□□□□□ -0.51
SKA1-203ENST00000417656 FFAR3O14843 346 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 NKX2-8O15522 239 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 GPR42O15529 346 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 FOXS1O43638 330 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 DLX3O60479 287 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 PROCP04070 461 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 RAB40ALP0C0E4 278 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 IL1RNP18510 177 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 TAC1P20366 129 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 FBLP22087 321 aaKnown RBP11.86□□□□□ -0.51
SKA1-203ENST00000417656 CXCR2P25025 360 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 PTPN4P29074 926 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 CRHR1P34998 444 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 PIK3CGP48736 1102 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 SLC18A2Q05940 514 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 RGS1Q08116 209 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 CDC20Q12834 499 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 IL10RAQ13651 578 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 E2F2Q14209 437 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 TBCCQ15814 346 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 NDUFA9Q16795 377 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 PAGE2BQ5JRK9 111 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 TOR1AIP1Q5JTV8 583 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 BEND6Q5SZJ8 279 aaPredicted RBP11.86□□□□□ -0.51
SKA1-203ENST00000417656 CEP85LQ5SZL2 805 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 GRHL2Q6ISB3 625 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 PRMT9Q6P2P2 845 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 VN1R5Q7Z5H4 357 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 MYLK4Q86YV6 388 aaPredicted RBP11.86□□□□□ -0.51
SKA1-203ENST00000417656 TMEM151BQ8IW70 566 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 ZSCAN1Q8NBB4 408 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 OR9A4Q8NGU2 314 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 NT5CQ8TCD5 201 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 CREB3L4Q8TEY5 395 aa11.86□□□□□ -0.51
SKA1-203ENST00000417656 ZNF483Q8TF39 744 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms