RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 VNN3Q9NY84 501 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 HCN4Q9Y3Q4 1203 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 RBBP9O75884 186 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 CELF2O95319 508 aaKnown RBP11.51□□□□□ -0.57
SYNPO-202ENST00000394243 RGS6P49758 472 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 MOGSQ13724 837 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 KCNJ11Q14654 390 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 PIM3Q86V86 326 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 PHYKPLQ8IUZ5 450 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 KCNA7Q96RP8 456 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 TREX2Q9BQ50 279 aaPredicted RBP11.51□□□□□ -0.57
SYNPO-202ENST00000394243 TRMT61BQ9BVS5 477 aaKnown RBP11.51□□□□□ -0.57
SYNPO-202ENST00000394243 A0A1B0GV50 99 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 DFNA5O60443 496 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 BRCC3P46736 316 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 CYBRD1Q53TN4 286 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 DESI1Q6ICB0 168 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF529Q6P280 563 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 NAPRTQ6XQN6 538 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 ATAD1Q8NBU5 361 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 ACBD4Q8NC06 268 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 RBM18Q96H35 190 aaKnown RBP11.51□□□□□ -0.57
SYNPO-202ENST00000394243 E9PCH4 1651 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 A0A1B0GVT2 93 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TRIM64A6NGJ6 449 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TRIM64BA6NI03 449 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 GABRDO14764 452 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 STBD1O95210 358 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ADH7P40394 386 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF616Q08AN1 781 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SNTB2Q13425 540 aaKnown RBP11.5□□□□□ -0.57
SYNPO-202ENST00000394243 MAPK14Q16539 360 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 PPP1R3AQ16821 1122 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 CARM1Q86X55 608 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 LINC00471Q8N535 108 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 KCT2Q8NC54 265 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TMIGD2Q96BF3 282 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 CCM2LQ9NUG4 571 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TRBV23OR9-2A0A075B6M9 112 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 B8ZZF3 427 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 OIP5O43482 229 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 RCBTB2O95199 551 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 GKN3PP0CG01 181 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 CMPK1P30085 196 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 PRMT2P55345 433 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TAS2R43P59537 309 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ABHD18Q0P651 414 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 FUT2Q10981 343 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 POU4F3Q15319 338 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 BCL2L15Q5TBC7 163 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 KIAA1324Q6UXG2 1013 aaKnown RBP11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF565Q8N9K5 539 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ABHD11Q8NFV4 315 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 OR7D4Q8NG98 312 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 OR8D1Q8WZ84 308 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 LHPPQ9H008 270 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SMOXQ9NWM0 555 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 GIMAP2Q9UG22 337 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ANKRD12Q6UB98 2062 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 IFNA17P01571 189 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 OR1E2P47887 323 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TAF10Q12962 218 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TMEM69Q5SWH9 247 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 IGFN1Q86VF2 1251 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 NUFIP1Q9UHK0 495 aaKnown RBP11.5□□□□□ -0.57
SYNPO-202ENST00000394243 A0A1W2PPK0 400 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 INPPL1O15357 1258 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 GSTM2P28161 218 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 NDUFV1P49821 464 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 FGL1Q08830 312 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SPANXN4Q5MJ08 99 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 CEACAM20Q6UY09 585 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 GALNT7Q86SF2 657 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 OR13C4Q8NGS5 318 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 OR13J1Q8NGT2 312 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SSX3Q99909 188 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 FAM118AQ9NWS6 357 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 QPCTLQ9NXS2 382 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 A0A0G2JN53 185 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TYROBPO43914 113 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 NPPAP01160 153 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ITGA5P08648 1049 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 HTR1AP08908 422 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 HSD11B1P28845 292 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ALDH3B2P48448 385 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 YBEYP58557 167 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-202ENST00000394243 CMPK2Q5EBM0 449 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 KANK2Q63ZY3 851 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 NANOGP8Q6NSW7 305 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ARRDC4Q8NCT1 418 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SLC25A36Q96CQ1 311 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 MGLLQ99685 303 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SLC6A7Q99884 636 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 OR10A4Q9H209 315 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SYT4Q9H2B2 425 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 NANOGQ9H9S0 305 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 DERAQ9Y315 318 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 CAPN5O15484 640 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-202ENST00000394243 AHSGP02765 367 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 IL3P08700 152 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms