RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 RNF220Q5VTB9 566 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 NOXRED1Q6NXP6 359 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 ERN2Q76MJ5 926 aaKnown RBP13.57□□□□□ -0.24
LDB3-204ENST00000372066 GPR180Q86V85 440 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 RIMKLAQ8IXN7 391 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 MICU2Q8IYU8 434 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 DTWD1Q8N5C7 304 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 CADM4Q8NFZ8 388 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 DNASE2BQ8WZ79 361 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 PYCR2Q96C36 320 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 MTFMTQ96DP5 389 aaKnown RBP13.57□□□□□ -0.24
LDB3-204ENST00000372066 SLC29A1Q99808 456 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 CPPED1Q9BRF8 314 aaPredicted RBP13.57□□□□□ -0.24
LDB3-204ENST00000372066 HAUS8Q9BT25 410 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 WRAP53Q9BUR4 548 aaKnown RBP13.57□□□□□ -0.24
LDB3-204ENST00000372066 HDAC8Q9BY41 377 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 ZDHHC5Q9C0B5 715 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 PAIP1Q9H074 479 aaKnown RBP13.57□□□□□ -0.24
LDB3-204ENST00000372066 DPEP2Q9H4A9 486 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 TRIM39Q9HCM9 518 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 USP36Q9P275 1121 aaKnown RBP13.57□□□□□ -0.24
LDB3-204ENST00000372066 VPS29Q9UBQ0 182 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 ZNF639Q9UID6 485 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 ITM2BQ9Y287 266 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 DLGAP4Q9Y2H0 992 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 KCNE2Q9Y6J6 123 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 PCNX2A6NKB5 2137 aa13.57□□□□□ -0.24
LDB3-204ENST00000372066 IGF2RP11717 2491 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 A0A1B0GTW7 788 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 TMEM202A6NGA9 273 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 SAC3D1A6NKF1 404 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 SOCS2O14508 198 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 LZTS3O60299 673 aaPredicted RBP13.56□□□□□ -0.24
LDB3-204ENST00000372066 CLPTM1O96005 669 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 ACADMP11310 421 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 C6P13671 934 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 IMPA1P29218 277 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 RPL5P46777 297 aaKnown RBP13.56□□□□□ -0.24
LDB3-204ENST00000372066 TPMTP51580 245 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 ABHD18Q0P651 414 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 LRRC74AQ0VAA2 488 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 NAE1Q13564 534 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 DOC2AQ14183 400 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 SELPLGQ14242 412 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 FAM46CQ5VWP2 391 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 RAET1GQ6H3X3 334 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 KRT80Q6KB66 452 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 CAPN13Q6MZZ7 669 aaPredicted RBP13.56□□□□□ -0.24
LDB3-204ENST00000372066 EPHX4Q8IUS5 362 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 NAXDQ8IW45 347 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 CBR4Q8N4T8 237 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 KRTCAP2Q8N6L1 136 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 ZNF366Q8N895 744 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 HM13Q8TCT9 377 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 TFAP2CQ92754 450 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 WDR34Q96EX3 536 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 TSC22D3Q99576 134 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 THUMPD3Q9BV44 507 aaKnown RBP13.56□□□□□ -0.24
LDB3-204ENST00000372066 TRIM8Q9BZR9 551 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 MAGIXQ9H6Y5 334 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 OLAHQ9NV23 265 aa13.56□□□□□ -0.24
LDB3-204ENST00000372066 FAM120CQ9NX05 1096 aaKnown RBP13.56□□□□□ -0.24
LDB3-204ENST00000372066 CKAP5Q14008 2032 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 PCM1Q15154 2024 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 RNF103-CHMP3A0A140T963 221 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 FAM221BA6H8Z2 402 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 KLHL33A6NCF5 533 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 METTL12A8MUP2 240 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 PRAMEF4O60810 478 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 PRSS23O95084 383 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 C1orf105O95561 183 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 EPHX1P07099 455 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 HOXB9P17482 250 aaPredicted RBP13.55□□□□□ -0.24
LDB3-204ENST00000372066 CKMT2P17540 419 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 KIR3DL1P43629 444 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 BDKRB1P46663 353 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 PREPP48147 710 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 RPA4Q13156 261 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 APOFQ13790 326 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 ENPP2Q13822 863 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 POM121L1PQ3SYA9 428 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 SPIN4Q56A73 249 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 ZNF648Q5T619 568 aaPredicted RBP13.55□□□□□ -0.24
LDB3-204ENST00000372066 PRAMEF9Q5VWM5 478 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 UNC5DQ6UXZ4 953 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 CALHM3Q86XJ0 350 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 MSRB3Q8IXL7 192 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 CXorf40AQ8TE69 158 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 APIPQ96GX9 242 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 FAM129BQ96TA1 746 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 PKP4Q99569 1192 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 EFCAB11Q9BUY7 163 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 CHID1Q9BWS9 393 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 YIPF3Q9GZM5 350 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 EHD1Q9H4M9 534 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 KAT8Q9H7Z6 458 aaKnown RBP13.55□□□□□ -0.24
LDB3-204ENST00000372066 SERHLQ9NQF3 203 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 SLC25A37Q9NYZ2 338 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 DYRK1BQ9Y463 629 aa13.55□□□□□ -0.24
LDB3-204ENST00000372066 PI4KAP42356 2102 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms