RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 RPS19BP1Q86WX3 136 aaKnown RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 DMRTC2Q8IXT2 367 aaPredicted RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 CPSF7Q8N684 471 aaKnown RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 OTUD6BQ8N6M0 293 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 PLPP5Q8NEB5 264 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 NINJ1Q92982 152 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 THAP11Q96EK4 314 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 BIRC8Q96P09 236 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 OR1F2PQ96R84 312 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 PKP4Q99569 1192 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 FOXC2Q99958 501 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 FAM129AQ9BZQ8 928 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 ANKHQ9HCJ1 492 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 TSR3Q9UJK0 312 aaKnown RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 USP27XA6NNY8 438 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 BTNL10A8MVZ5 291 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 MAGEB17A8MXT2 336 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 MIF4GDA9UHW6 222 aaKnown RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 AP3B1O00203 1094 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TFECO14948 347 aaPredicted RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 ZNHIT1O43257 154 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 PRMT3O60678 531 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 SLC16A8O95907 504 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 IFNB1P01574 187 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 APRTP07741 180 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 IL1RNP18510 177 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 CHRM3P20309 590 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 FMO4P31512 558 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 PTGER1P34995 402 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 PPP2R2AP63151 447 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 FOLH1Q04609 750 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TFF3Q07654 80 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TBX2Q13207 712 aaPredicted RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 KLHL38Q2WGJ6 581 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 RNFT1Q5M7Z0 435 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TMEM214Q6NUQ4 689 aaKnown RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 TGIF2LYQ8IUE0 185 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 PLD3Q8IV08 490 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS29-201ENST00000360579 CAMKVQ8NCB2 501 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 FBXO15Q8NCQ5 510 aaPredicted RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 ZNF480Q8WV37 535 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 RND1Q92730 232 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TCF12Q99081 682 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 FRMD8P1Q9BZ68 369 aaPredicted RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 IL22Q9GZX6 179 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 CXXC4Q9H2H0 198 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TP63Q9H3D4 680 aaPredicted RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 CDCP1Q9H5V8 836 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TRIM45Q9H8W5 580 aaPredicted RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 NPDC1Q9NQX5 325 aaPredicted RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 RAB6BQ9NRW1 208 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TREX1Q9NSU2 369 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 TMEM184CQ9NVA4 438 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 AMFRQ9UKV5 643 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 KLF13Q9Y2Y9 288 aaPredicted RBP13.01□□□□□ -0.33
VPS29-201ENST00000360579 SCN2AQ99250 2005 aa13.01□□□□□ -0.33
VPS29-201ENST00000360579 A0A1B0GTH9 108 aa13□□□□□ -0.33
VPS29-201ENST00000360579 FAM90A27PA6NNH2 459 aa13□□□□□ -0.33
VPS29-201ENST00000360579 E5RI56 91 aa13□□□□□ -0.33
VPS29-201ENST00000360579 KLRC4-KLRK1H3BQV0 150 aa13□□□□□ -0.33
VPS29-201ENST00000360579 H7BY64 318 aa13□□□□□ -0.33
VPS29-201ENST00000360579 SGK494L7N484 410 aa13□□□□□ -0.33
VPS29-201ENST00000360579 NIPSNAP2O75323 286 aa13□□□□□ -0.33
VPS29-201ENST00000360579 TOXO94900 526 aa13□□□□□ -0.33
VPS29-201ENST00000360579 ZWINTO95229 277 aa13□□□□□ -0.33
VPS29-201ENST00000360579 HOXD4P09016 255 aaPredicted RBP13□□□□□ -0.33
VPS29-201ENST00000360579 ST13P50502 369 aaKnown RBP13□□□□□ -0.33
VPS29-201ENST00000360579 IST1P53990 364 aa13□□□□□ -0.33
VPS29-201ENST00000360579 OR4D2P58180 307 aa13□□□□□ -0.33
VPS29-201ENST00000360579 SLC26A5P58743 744 aa13□□□□□ -0.33
VPS29-201ENST00000360579 MPP1Q00013 466 aa13□□□□□ -0.33
VPS29-201ENST00000360579 TTLL9Q3SXZ7 439 aa13□□□□□ -0.33
VPS29-201ENST00000360579 ACSBG2Q5FVE4 666 aa13□□□□□ -0.33
VPS29-201ENST00000360579 PRSS41Q7RTY9 318 aa13□□□□□ -0.33
VPS29-201ENST00000360579 PEX26Q7Z412 305 aa13□□□□□ -0.33
VPS29-201ENST00000360579 VN1R4Q7Z5H5 301 aa13□□□□□ -0.33
VPS29-201ENST00000360579 CLYBLQ8N0X4 340 aa13□□□□□ -0.33
VPS29-201ENST00000360579 LRRC57Q8N9N7 239 aa13□□□□□ -0.33
VPS29-201ENST00000360579 TC2NQ8N9U0 490 aa13□□□□□ -0.33
VPS29-201ENST00000360579 PPFIBP2Q8ND30 876 aa13□□□□□ -0.33
VPS29-201ENST00000360579 ELP5Q8TE02 316 aa13□□□□□ -0.33
VPS29-201ENST00000360579 LPGAT1Q92604 370 aa13□□□□□ -0.33
VPS29-201ENST00000360579 PRAP1Q96NZ9 151 aa13□□□□□ -0.33
VPS29-201ENST00000360579 ABCF3Q9NUQ8 709 aa13□□□□□ -0.33
VPS29-201ENST00000360579 RNF6Q9Y252 685 aa13□□□□□ -0.33
VPS29-201ENST00000360579 NKX2-6A6NCS4 301 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 OR2W5A6NFC9 320 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 FCHO1O14526 889 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 JAK1P23458 1154 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 TPP2P29144 1249 aaPredicted RBP12.99□□□□□ -0.33
VPS29-201ENST00000360579 TRHRP34981 398 aaPredicted RBP12.99□□□□□ -0.33
VPS29-201ENST00000360579 HLCSP50747 726 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 SESN2P58004 480 aaPredicted RBP12.99□□□□□ -0.33
VPS29-201ENST00000360579 SKP1P63208 163 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 MEF2AQ02078 507 aaPredicted RBP12.99□□□□□ -0.33
VPS29-201ENST00000360579 RHAGQ02094 409 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 MYBPHQ13203 477 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 TYSND1Q2T9J0 566 aa12.99□□□□□ -0.33
VPS29-201ENST00000360579 ZNF468Q5VIY5 522 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms