RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TMEFF2Q9UIK5 374 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-201ENST00000341247 FAF1Q9UNN5 650 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-201ENST00000341247 SAMD4AQ9UPU9 718 aaKnown RBP9.96□□□□□ -0.82
LIMA1-201ENST00000341247 MAP4K5Q9Y4K4 846 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 C2orf16Q68DN1 1984 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 A0A0G2JN53 185 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 FGF19O95750 216 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 FABP3P05413 133 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 DAPP51397 102 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 MTAPQ13126 283 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 SMN1Q16637 294 aaKnown RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 BROXQ5VW32 411 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 DUS1LQ6P1R4 473 aaKnown RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 CCDC81Q6ZN84 652 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 Q6ZPB1 254 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 COMMD6Q7Z4G1 85 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 SLC44A2Q8IWA5 706 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 SVOPLQ8N434 492 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF557Q8N988 423 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 C5AR2Q9P296 337 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 H0YIV9 168 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 PCDH8O95206 1070 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 IDSP22304 550 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 PRPH2P23942 346 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 TRPC1P48995 793 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 TAS2R50P59544 299 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 LSM3P62310 102 aaKnown RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 HBA1P69905 142 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 C2orf80Q0P641 193 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 PPIGQ13427 754 aaKnown RBP eCLIP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 TTC23LQ6PF05 361 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF773Q6PK81 442 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 WDR87Q6ZQQ6 2873 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 NPAS3Q8IXF0 933 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 C7orf61Q8IZ16 206 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 COQ10AQ96MF6 247 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 MARK1Q9P0L2 795 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 TESMINQ9Y4I5 508 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 PCDHB11Q9Y5F2 797 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 SNX8Q9Y5X2 465 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 PIPSLA2A3N6 862 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 QSOX1O00391 747 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 CA3P07451 260 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 CALRP27797 417 aaKnown RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 PSMB5P28074 263 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 TIA1P31483 386 aaKnown RBP eCLIP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 DGKEP52429 567 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 SH3BGRP55822 239 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 TAP2Q03519 686 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 KCNC3Q14003 757 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 SERPINA11Q86U17 422 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 PLD3Q8IV08 490 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 ZC3H7AQ8IWR0 971 aaKnown RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 CHPFQ8IZ52 775 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 VPS37AQ8NEZ2 397 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 GAB3Q8WWW8 586 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 VPS35Q96QK1 796 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 LGR4Q9BXB1 951 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 FAM120CQ9NX05 1096 aaKnown RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 DKK3Q9UBP4 350 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 SLC23A2Q9UGH3 650 aa9.95□□□□□ -0.82
LIMA1-201ENST00000341247 EXO1Q9UQ84 846 aaKnown RBP9.95□□□□□ -0.82
LIMA1-201ENST00000341247 NINQ8N4C6 2090 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 PCM1Q15154 2024 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 TSPAN11A1L157 253 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 NOL3O60936 208 aaKnown RBP9.94□□□□□ -0.82
LIMA1-201ENST00000341247 SERPIND1P05546 499 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 HPCAL1P37235 193 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 IL12RB1P42701 662 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 ALDH9A1P49189 494 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 ARHGDIAP52565 204 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 RAD23AP54725 363 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 TMED1Q13445 227 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 HNRNPA1L2Q32P51 320 aaKnown RBP9.94□□□□□ -0.82
LIMA1-201ENST00000341247 LAIR2Q6ISS4 152 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 FAM20CQ8IXL6 584 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 OR8J2Q8NGG1 315 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 OR9A1PQ8NGU1 263 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 OTUB2Q96DC9 234 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 FAM129BQ96TA1 746 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 ASPSCR1Q9BZE9 553 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 OSGEPL1Q9H4B0 414 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 IL1RAPQ9NPH3 570 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 MOSPD1Q9UJG1 213 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 FEZF1A0PJY2 475 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 INMTO95050 263 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 SRPRAP08240 638 aaKnown RBP9.94□□□□□ -0.82
LIMA1-201ENST00000341247 HTR1AP08908 422 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 GPX2P18283 190 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 EN2P19622 333 aaPredicted RBP9.94□□□□□ -0.82
LIMA1-201ENST00000341247 ALDH4A1P30038 563 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 HPCAP84074 193 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 DGCR6Q14129 220 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 HEATR4Q86WZ0 1026 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 HIPK1Q86Z02 1210 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 GALNT13Q8IUC8 556 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 SPARTQ8N0X7 666 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 SMYD1Q8NB12 490 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 CXorf40AQ8TE69 158 aa9.94□□□□□ -0.82
LIMA1-201ENST00000341247 CHTF18Q8WVB6 975 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms