RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HSDL2Q6YN16 418 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 COMTD1Q86VU5 262 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 UPF1Q92900 1129 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 F5P12259 2224 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 C12orf71A8MTZ7 269 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 CLIC1O00299 241 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 MT-ND1P03886 318 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 POU2F1P14859 743 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 S1PR1P21453 382 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 DSTNP60981 165 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 GPR33Q49SQ1 333 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 SYNPOQ8N3V7 929 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 BPIFA1Q9NP55 256 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 GNG8Q9UK08 70 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 RGS9O75916 674 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 HDCP19113 662 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 NCBP2P52298 156 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 UBXN11Q5T124 520 aa13.89□□□□□ -0.19
COL7A1-201ENST00000328333 IMP3Q9NV31 184 aaKnown RBP13.89□□□□□ -0.19
COL7A1-201ENST00000328333 E9PAM4 449 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 L1CAMP32004 1257 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 DNAJB13P59910 316 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 DHCR24Q15392 516 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 AKAP11Q9UKA4 1901 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 TECPR2O15040 1411 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 KIAA1217Q5T5P2 1943 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 RDH16O75452 317 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 PSMD10O75832 226 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 HCAR3P49019 387 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 MRPL41Q8IXM3 137 aaKnown RBP13.88□□□□□ -0.19
COL7A1-201ENST00000328333 CANT1Q8WVQ1 401 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 CHFRQ96EP1 664 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 CAPN5O15484 640 aaPredicted RBP13.88□□□□□ -0.19
COL7A1-201ENST00000328333 HCRTR2O43614 444 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 BTG3Q14201 252 aaPredicted RBP13.88□□□□□ -0.19
COL7A1-201ENST00000328333 GK2Q14410 553 aaPredicted RBP13.88□□□□□ -0.19
COL7A1-201ENST00000328333 SSX2Q16385 188 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 GLT8D1Q68CQ7 371 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 CES5AQ6NT32 575 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 PNCKQ6P2M8 343 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 HSH2DQ96JZ2 352 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 UCK2Q9BZX2 261 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 SAV1Q9H4B6 383 aaPredicted RBP13.88□□□□□ -0.19
COL7A1-201ENST00000328333 MS4A12Q9NXJ0 267 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 FFAR2O15552 330 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 ARSFP54793 590 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 ATAD3CQ5T2N8 411 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 RAP1GAP2Q684P5 730 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 ESX1Q8N693 406 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 BORCS7Q96B45 105 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 TMEM45AQ9NWC5 275 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 YDJCA8MPS7 323 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 SCDO00767 359 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 MFSD11O43934 449 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 CILPO75339 1184 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 RAD51DO75771 328 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 HRGP04196 525 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 ITGA5P08648 1049 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 DPP6P42658 865 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 MAN2A2P49641 1150 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 DEFA6Q01524 100 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 HACD4Q5VWC8 232 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 SMARCD2Q92925 531 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 A0A0J9YVX5 310 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF726A6NNF4 738 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 CHRNA1P02708 482 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 HCKP08631 526 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 IL10RBQ08334 325 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 PTCHD3Q3KNS1 767 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 PXKQ7Z7A4 578 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 HCAR2Q8TDS4 363 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 HAS1Q92839 578 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 SERINC1Q9NRX5 453 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 ANKRD31Q8N7Z5 1873 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 INSIG1O15503 277 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 TLR5O60602 858 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 H2AFB2P0C5Z0 115 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 GPR151Q8TDV0 419 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 CDC6Q99741 560 aa13.88□□□□□ -0.19
COL7A1-201ENST00000328333 C1RP00736 705 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 CHRNB2P17787 502 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 MAOAP21397 527 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 RELL1Q8IUW5 271 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 CYP2W1Q8TAV3 490 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 FANK1Q8TC84 345 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF675Q8TD23 568 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 HNRNPA0Q13151 305 aaKnown RBP13.87□□□□□ -0.19
COL7A1-201ENST00000328333 METTL11BQ5VVY1 283 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 SKA3Q8IX90 412 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 MGAT4CQ9UBM8 478 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 PCDHB11Q9Y5F2 797 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 LUMP51884 338 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-201ENST00000328333 CCDC58Q4VC31 144 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 PPP1R26Q5T8A7 1209 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-201ENST00000328333 CCDC71Q8IV32 467 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-201ENST00000328333 OR5T2Q8NGG2 359 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 SNAPC3Q92966 411 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF599Q96NL3 588 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 GSKIPQ9P0R6 139 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 AP1M2Q9Y6Q5 423 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms