RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 BTN2A1Q7KYR7 527 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 KLHL7Q8IXQ5 586 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 APCDD1Q8J025 514 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 GPC2Q8N158 579 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 DCLK2Q8N568 766 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 GBP7Q8N8V2 638 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 NHLRC2Q8NBF2 726 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 OR5T2Q8NGG2 359 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 MAPK15Q8TD08 544 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 SMAP2Q8WU79 429 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 EXOC4Q96A65 974 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 AZIN2Q96A70 460 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 JAKMIP1Q96N16 626 aaKnown RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 PARK7Q99497 189 aaKnown RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 TDRD1Q9BXT4 1180 aaKnown RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 KRTAP2-2Q9BYT5 123 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 NYXQ9GZU5 481 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 COPS7BQ9H9Q2 264 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 PLCXD1Q9NUJ7 323 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 KLHL8Q9P2G9 620 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 DNAJB9Q9UBS3 223 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 SLC12A6Q9UHW9 1150 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 RUVBL2Q9Y230 463 aaKnown RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 SELENOKQ9Y6D0 94 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 EPRSP07814 1512 aaKnown RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 TDRD15B5MCY1 1934 aaKnown RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 TRAV18A0A075B6X5 111 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 A0A0B4J203 849 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ILVBLA1L0T0 632 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 C15orf61A6NNL5 157 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 CCL24O00175 119 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 NXPH2O95156 264 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 SUPT20HL2P0C7V6 817 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 LBPP18428 481 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 OAS2P29728 719 aaKnown RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 HLA-FP30511 346 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ALDH1B1P30837 517 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 CTNNA1P35221 906 aaKnown RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 TNNT3P45378 269 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 LBX1P52954 281 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 DCDC1P59894 354 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 MEP1BQ16820 701 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 TYSND1Q2T9J0 566 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 HLA-BQ31612 363 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ANKRD20A4Q4UJ75 823 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ANKRD20A8PQ5CZ79 823 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 NHSL2Q5HYW2 709 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 FGD3Q5JSP0 725 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ANKRD20A2Q5SQ80 823 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 WLSQ5T9L3 541 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ANKRD20A1Q5TYW2 823 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ANKRD20A3Q5VUR7 823 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 FAM46CQ5VWP2 391 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ZNF772Q68DY9 489 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 CPEB2Q7Z5Q1 589 aaKnown RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 PTAR1Q7Z6K3 402 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 PRUNE1Q86TP1 453 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 MEX3DQ86XN8 651 aaKnown RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 LRTM2Q8N967 370 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 OR4C15Q8NGM1 316 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 OR6S1Q8NH40 331 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 CTCFLQ8NI51 663 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 GDAP1Q8TB36 358 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ATP6V1E2Q96A05 226 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ART5Q96L15 291 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 NECTIN4Q96NY8 510 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 TSSK2Q96PF2 358 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 CLEC7AQ9BXN2 247 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 UBQLN3Q9H347 655 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 EGLN3Q9H6Z9 239 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 C10orf88Q9H8K7 445 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 TUFT1Q9NNX1 390 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 IARS2Q9NSE4 1012 aaKnown RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ZDHHC18Q9NUE0 388 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 EXOC1Q9NV70 894 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 TBC1D13Q9NVG8 400 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ARGLU1Q9NWB6 273 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 BARHL2Q9NY43 387 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 SLCO1C1Q9NYB5 712 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 TMEM181Q9P2C4 612 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 CACNG5Q9UF02 275 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 ARMCX3Q9UH62 379 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-201ENST00000326004 AGTPBP1Q9UPW5 1226 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 KLK4Q9Y5K2 254 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 WDR97A6NE52 1622 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 NUP160Q12769 1436 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 NPHP3Q7Z494 1330 aa2.92□□□□□ -1.94
HMGB1-201ENST00000326004 RAPGEF6Q8TEU7 1601 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 KBTBD13C9JR72 458 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 PRSS46E5RG02 174 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 ZNF195O14628 629 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 ARHGEF9O43307 516 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 ZFAND5O76080 213 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 ANKRD34CP0C6C1 535 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 KRT3P12035 628 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 TYMPP19971 482 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 AADACP22760 399 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 RBMS1P29558 406 aaKnown RBP2.91□□□□□ -1.94
HMGB1-201ENST00000326004 ATP5DP30049 168 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms