RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 PLOD3O60568 738 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 ESR1P03372 595 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 SRP54P61011 504 aaKnown RBP14.09□□□□□ -0.15
PTPN9-201ENST00000306726 HIST2H2ACQ16777 129 aaPredicted RBP14.09□□□□□ -0.15
PTPN9-201ENST00000306726 BCL7AQ4VC05 210 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 CLEC12AQ5QGZ9 265 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 PDZK1Q5T2W1 519 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 C1QTNF12Q5T7M4 302 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 NAGSQ8N159 534 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 RAD9AQ99638 391 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 TMEM246Q9BRR3 403 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 SORBS1Q9BX66 1292 aaKnown RBP14.09□□□□□ -0.15
PTPN9-201ENST00000306726 TTTY10Q9BZA0 68 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 MRM3Q9HC36 420 aaKnown RBP14.09□□□□□ -0.15
PTPN9-201ENST00000306726 NUDT4Q9NZJ9 180 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 SAMD4AQ9UPU9 718 aaKnown RBP14.09□□□□□ -0.15
PTPN9-201ENST00000306726 SCN5AQ14524 2016 aa14.09□□□□□ -0.15
PTPN9-201ENST00000306726 SLC28A1O00337 649 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 GUCY1B2O75343 617 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 JRKO75564 520 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 PTHP01270 115 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 TOP3AQ13472 1001 aaPredicted RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 BTG3Q14201 252 aaPredicted RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 OXA1LQ15070 435 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 CCDC80Q76M96 950 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 VPS37AQ8NEZ2 397 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 NFKBIDQ8NI38 313 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 ZNF675Q8TD23 568 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 SORCS1Q8WY21 1168 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 MUL1Q969V5 352 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 DIRAS2Q96HU8 199 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 SLC22A12Q96S37 553 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 GPSM3Q9Y4H4 160 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 COQ9O75208 318 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 ITGB8P26012 769 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 HOXD9P28356 352 aaPredicted RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 RPL34P49207 117 aaKnown RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 CPTPQ5TA50 214 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 LIPKQ5VXJ0 399 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 KIAA1614Q5VZ46 1190 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 CPZQ66K79 652 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 ZNF57Q68EA5 555 aaPredicted RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 THOC7Q6I9Y2 204 aaKnown RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 B3GLCTQ6Y288 498 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 TRMT11Q7Z4G4 463 aaKnown RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 NRARPQ7Z6K4 114 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 OR6Q1Q8NGQ2 317 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 ARSGQ96EG1 525 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 ITPAQ9BY32 194 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 CD244Q9BZW8 370 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 CSNK1G1Q9HCP0 422 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 RPRD1BQ9NQG5 326 aaKnown RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 DCAF13Q9NV06 445 aaKnown RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 NUFIP1Q9UHK0 495 aaKnown RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 CCDC88CQ9P219 2028 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 RTCAO00442 366 aaKnown RBP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 GFRA2O00451 464 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 TAPBPO15533 448 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 PCDH7O60245 1069 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 PRLP01236 227 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 BDKRB1P46663 353 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 ATP13A5Q4VNC0 1218 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 SYCE2Q6PIF2 218 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.08□□□□□ -0.16
PTPN9-201ENST00000306726 MSRB3Q8IXL7 192 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 ARNT2Q9HBZ2 717 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 IL26Q9NPH9 171 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 TVP23BQ9NYZ1 205 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 PLAGL1Q9UM63 463 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 ATG2BQ96BY7 2078 aa14.08□□□□□ -0.16
PTPN9-201ENST00000306726 TNFRSF10BO14763 440 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 ZW10O43264 779 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 COCHO43405 550 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 SDC1P18827 310 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 ZNF140P52738 457 aaPredicted RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 YBEYP58557 167 aaPredicted RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 PPP2R2BQ00005 443 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 CACNG1Q06432 222 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 FOXM1Q08050 763 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 GALNT1Q10472 559 aaPredicted RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 TBRG1Q3YBR2 411 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 ZNF691Q5VV52 312 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 PAMR1Q6UXH9 720 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 VRK3Q8IV63 474 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 SVOPLQ8N434 492 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 WFDC5Q8TCV5 224 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 RC3H2Q9HBD1 1191 aaKnown RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 MIEF1Q9NQG6 463 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 MBD1Q9UIS9 605 aaPredicted RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 NEU3Q9UQ49 428 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 TSPAN19P0C672 248 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 HNF1BP35680 557 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 RECQLP46063 649 aaPredicted RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 RAB8AP61006 207 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 MLLT1Q03111 559 aaPredicted RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 MAD2L1Q13257 205 aaPredicted RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 ZC3H12BQ5HYM0 836 aaKnown RBP14.07□□□□□ -0.16
PTPN9-201ENST00000306726 GTF2IRD2BQ6EKJ0 949 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 SBSNQ6UWP8 590 aa14.07□□□□□ -0.16
PTPN9-201ENST00000306726 DDX53Q86TM3 631 aaKnown RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms