RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ABCG4Q9H172 646 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 IL36AQ9UHA7 158 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 SAMD4AQ9UPU9 718 aaKnown RBP16.02■□□□□ 0.16
VPS54-201ENST00000272322 DOCK9Q9BZ29 2069 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 FAM220BPB1ANY3 271 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 OPRL1P41146 370 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 HNMTP50135 292 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 GP2P55259 537 aaKnown RBP16.02■□□□□ 0.15
VPS54-201ENST00000272322 TNFAIP8L2Q6P589 184 aaPredicted RBP16.02■□□□□ 0.15
VPS54-201ENST00000272322 LIPIQ6XZB0 460 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 CCDC149Q6ZUS6 474 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 SLCO6A1Q86UG4 719 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 AADATQ8N5Z0 425 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 PAK6Q9NQU5 681 aaPredicted RBP16.02■□□□□ 0.15
VPS54-201ENST00000272322 BLOC1S6Q9UL45 172 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 OTOL1A6NHN0 477 aaPredicted RBP16.02■□□□□ 0.15
VPS54-201ENST00000272322 WNT9AO14904 365 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 CBSLP0DN79 551 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 CBSP35520 551 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 CHI3L1P36222 383 aaPredicted RBP16.02■□□□□ 0.15
VPS54-201ENST00000272322 ST8SIA6P61647 398 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 RPP38P78345 283 aaKnown RBP16.02■□□□□ 0.15
VPS54-201ENST00000272322 MADCAM1Q13477 382 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 FNDC3BQ53EP0 1204 aaKnown RBP16.02■□□□□ 0.15
VPS54-201ENST00000272322 DDHD1Q8NEL9 900 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 NFKBIDQ8NI38 313 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 CSGALNACT1Q8TDX6 532 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 LYSMD1Q96S90 227 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 GULP1Q9UBP9 304 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 PSME2Q9UL46 239 aa16.02■□□□□ 0.15
VPS54-201ENST00000272322 LOC100506127A0A0U1RQW1 187 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 FEZF1A0PJY2 475 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 SUV39H1O43463 412 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 RETP07949 1114 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 ANKRD33Q7Z3H0 272 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 RNF130Q86XS8 419 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 HIPK1Q86Z02 1210 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 L3MBTL4Q8NA19 623 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 OR9Q2Q8NGE9 314 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 FNDC8Q8TC99 324 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 UBTD2Q8WUN7 234 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 RAB8BQ92930 207 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 ZNF641Q96N77 438 aaPredicted RBP16.01■□□□□ 0.15
VPS54-201ENST00000272322 FEVQ99581 238 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 IL1RAPQ9NPH3 570 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 TAS2R16Q9NYV7 291 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 MRPS23Q9Y3D9 190 aaKnown RBP16.01■□□□□ 0.15
VPS54-201ENST00000272322 SCN2BO60939 215 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 LATS1O95835 1130 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 CYP2A6P11509 494 aaPredicted RBP16.01■□□□□ 0.15
VPS54-201ENST00000272322 NRIP1P48552 1158 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 TP53BP2Q13625 1128 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 MPP7Q5T2T1 576 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 ARMCX6Q7L4S7 300 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 CALHM3Q86XJ0 350 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 HDAC2Q92769 488 aaKnown RBP16.01■□□□□ 0.15
VPS54-201ENST00000272322 WDR70Q9NW82 654 aa16.01■□□□□ 0.15
VPS54-201ENST00000272322 MYO10Q9HD67 2058 aa16■□□□□ 0.15
VPS54-201ENST00000272322 KLHL33A6NCF5 533 aa16■□□□□ 0.15
VPS54-201ENST00000272322 PRRT4C9JH25 899 aa16■□□□□ 0.15
VPS54-201ENST00000272322 NADKO95544 446 aaPredicted RBP16■□□□□ 0.15
VPS54-201ENST00000272322 CHRM5P08912 532 aaPredicted RBP16■□□□□ 0.15
VPS54-201ENST00000272322 CEBPBP17676 345 aa16■□□□□ 0.15
VPS54-201ENST00000272322 PSMB5P28074 263 aa16■□□□□ 0.15
VPS54-201ENST00000272322 DGKGP49619 791 aa16■□□□□ 0.15
VPS54-201ENST00000272322 CD300CQ08708 224 aa16■□□□□ 0.15
VPS54-201ENST00000272322 SPATS1Q496A3 300 aa16■□□□□ 0.15
VPS54-201ENST00000272322 LRIF1Q5T3J3 769 aa16■□□□□ 0.15
VPS54-201ENST00000272322 IRAK1BP1Q5VVH5 260 aa16■□□□□ 0.15
VPS54-201ENST00000272322 P3H2Q8IVL5 708 aa16■□□□□ 0.15
VPS54-201ENST00000272322 CHPFQ8IZ52 775 aa16■□□□□ 0.15
VPS54-201ENST00000272322 CLIP4Q8N3C7 705 aa16■□□□□ 0.15
VPS54-201ENST00000272322 SVOPLQ8N434 492 aa16■□□□□ 0.15
VPS54-201ENST00000272322 OSGEPL1Q9H4B0 414 aa16■□□□□ 0.15
VPS54-201ENST00000272322 ABHD14A-ACY1A0A1B0GW23 586 aa16■□□□□ 0.15
VPS54-201ENST00000272322 RFXAPO00287 272 aa16■□□□□ 0.15
VPS54-201ENST00000272322 RAE1P78406 368 aaKnown RBP16■□□□□ 0.15
VPS54-201ENST00000272322 CYP2A13Q16696 494 aa16■□□□□ 0.15
VPS54-201ENST00000272322 ZNF691Q5VV52 312 aa16■□□□□ 0.15
VPS54-201ENST00000272322 DRAXINQ8NBI3 349 aaPredicted RBP16■□□□□ 0.15
VPS54-201ENST00000272322 VPS37AQ8NEZ2 397 aa16■□□□□ 0.15
VPS54-201ENST00000272322 CEP295NLQ96MC4 621 aa16■□□□□ 0.15
VPS54-201ENST00000272322 RUVBL1Q9Y265 456 aaKnown RBP16■□□□□ 0.15
VPS54-201ENST00000272322 GLOD5A6NK44 160 aa16■□□□□ 0.15
VPS54-201ENST00000272322 PPM1DO15297 605 aa16■□□□□ 0.15
VPS54-201ENST00000272322 PCDHGA12O60330 932 aa16■□□□□ 0.15
VPS54-201ENST00000272322 MOSPD3O75425 235 aa16■□□□□ 0.15
VPS54-201ENST00000272322 POP7O75817 140 aaKnown RBP16■□□□□ 0.15
VPS54-201ENST00000272322 MRPL19P49406 292 aaKnown RBP16■□□□□ 0.15
VPS54-201ENST00000272322 SPIBQ01892 262 aa16■□□□□ 0.15
VPS54-201ENST00000272322 TBC1D25Q3MII6 688 aa16■□□□□ 0.15
VPS54-201ENST00000272322 RPS26P11Q5JNZ5 115 aaPredicted RBP16■□□□□ 0.15
VPS54-201ENST00000272322 PLEKHS1Q5SXH7 462 aa16■□□□□ 0.15
VPS54-201ENST00000272322 LILRA6Q6PI73 481 aa16■□□□□ 0.15
VPS54-201ENST00000272322 BRAT1Q6PJG6 821 aa16■□□□□ 0.15
VPS54-201ENST00000272322 COMMD6Q7Z4G1 85 aa16■□□□□ 0.15
VPS54-201ENST00000272322 CCDC71Q8IV32 467 aaPredicted RBP16■□□□□ 0.15
VPS54-201ENST00000272322 FAM217AQ8IXS0 508 aa16■□□□□ 0.15
VPS54-201ENST00000272322 WDR20Q8TBZ3 569 aa16■□□□□ 0.15
VPS54-201ENST00000272322 SLC35A5Q9BS91 424 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms