RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 CROTQ9UKG9 612 aa10.77□□□□□ -0.69
SF3B6-201ENST00000233468 PCDHGA6Q9Y5G7 932 aa10.77□□□□□ -0.69
SF3B6-201ENST00000233468 BSNQ9UPA5 3926 aa10.77□□□□□ -0.69
SF3B6-201ENST00000233468 SPTA1P02549 2419 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 H3BMH7 237 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 K7EPI3 171 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 UBXN8O00124 270 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 DSCR3O14972 297 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 OR1F1O43749 312 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 SHBGP04278 402 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 FAM87AP0C7U9 286 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 C1GALT1C1LP0DN25 315 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 LIFP15018 202 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 EPB42P16452 691 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 RORAP35398 523 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 AHRP35869 848 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 SLCO1A2P46721 670 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 HSPA7P48741 367 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 CYP4F2P78329 520 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 RGS1Q08116 209 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 GPS2Q13227 327 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 DNASE1L3Q13609 305 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 PWP1Q13610 501 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 FAM53BQ14153 422 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 PFKFB4Q16877 469 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 CRTC2Q53ET0 693 aaPredicted RBP10.76□□□□□ -0.69
SF3B6-201ENST00000233468 TECRLQ5HYJ1 363 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 ATG9BQ674R7 924 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 FRMPD2BQ6IN97 320 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 ZNF517Q6ZMY9 492 aaPredicted RBP10.76□□□□□ -0.69
SF3B6-201ENST00000233468 TMPRSS11BQ86T26 416 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 ASPGQ86U10 573 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 MFSD9Q8NBP5 474 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 TRPV3Q8NET8 790 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 SLC13A3Q8WWT9 602 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 CATSPER2Q96P56 530 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 GPR78Q96P69 363 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 OR4K3Q96R72 315 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 EFCAB11Q9BUY7 163 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 PRM3Q9NNZ6 103 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 IFT80Q9P2H3 777 aaPredicted RBP10.76□□□□□ -0.69
SF3B6-201ENST00000233468 CPSF2Q9P2I0 782 aaKnown RBP10.76□□□□□ -0.69
SF3B6-201ENST00000233468 XPR1Q9UBH6 696 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 FARSAQ9Y285 508 aaKnown RBP10.76□□□□□ -0.69
SF3B6-201ENST00000233468 PTPN13Q12923 2485 aa10.76□□□□□ -0.69
SF3B6-201ENST00000233468 LOC105369274A0A096LPK9 316 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 LOC102723532A0A0G2JNH3 316 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 LOC101059948A0A1B0GTJ6 334 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 TLDC2A0PJX2 215 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 SMIM23A6NLE4 172 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 STX16-NPEPL1H3BU86 382 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 STX16O14662 325 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 TAPBPO15533 448 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 HCRTR1O43613 425 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 KLK8O60259 260 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 GLRA3O75311 464 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 WISP1O95388 367 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 ALBP02768 609 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 ITGAXP20702 1163 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 PTPN4P29074 926 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 GDF5P43026 501 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 AVPR1BP47901 424 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 KCNC1P48547 511 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 YBX1P67809 324 aaKnown RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 REEP5Q00765 189 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 IRF8Q02556 426 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 SETDB1Q15047 1291 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 RBBP5Q15291 538 aaKnown RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 PCBP2Q15366 365 aaKnown RBP eCLIP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 TBCCQ15814 346 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 ZXDCQ2QGD7 858 aaPredicted RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 PRTGQ2VWP7 1150 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 NKAIN1Q4KMZ8 207 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 XKR6Q5GH73 641 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 CATSPEREQ5SY80 951 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 PRAMEF17Q5VTA0 474 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 TMIGD1Q6UXZ0 262 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 SYVN1Q86TM6 617 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 OR4N4Q8N0Y3 316 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 PLD6Q8N2A8 252 aaKnown RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 SLC38A9Q8NBW4 561 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 CT55Q8WUE5 264 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 CCDC126Q96EE4 140 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 PTCD3Q96EY7 689 aaKnown RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 MAGEB10Q96LZ2 347 aaPredicted RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 GBP5Q96PP8 586 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 TMEM79Q9BSE2 394 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 DRC3Q9H069 523 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 IQCGQ9H095 443 aaKnown RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 CHST8Q9H2A9 424 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 NT5DC2Q9H857 520 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 DHCR7Q9UBM7 475 aaKnown RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 ZFP69BQ9UJL9 534 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 MID2Q9UJV3 735 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 NXT1Q9UKK6 140 aaKnown RBP10.75□□□□□ -0.69
SF3B6-201ENST00000233468 GRID1Q9ULK0 1009 aa10.75□□□□□ -0.69
SF3B6-201ENST00000233468 DOPEY2Q9Y3R5 2298 aa10.74□□□□□ -0.69
SF3B6-201ENST00000233468 UTP20O75691 2785 aaKnown RBP10.74□□□□□ -0.69
SF3B6-201ENST00000233468 FEZF1A0PJY2 475 aa10.74□□□□□ -0.69
SF3B6-201ENST00000233468 CCDC151A5D8V7 595 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms