RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 H0YGN5 161 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 TYRP14679 529 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 MAZP56270 477 aaKnown RBP13.16□□□□□ -0.3
SF3A1-201ENST00000215793 PLEKHS1Q5SXH7 462 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF678Q5SXM1 525 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ZDHHC14Q8IZN3 488 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 AQP11Q8NBQ7 271 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 DENND1AQ8TEH3 1009 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 FRMD6Q96NE9 622 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 SLC6A15Q9H2J7 730 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 TMEM5Q9Y2B1 443 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 KCTD3Q9Y597 815 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 INSL5Q9Y5Q6 135 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 C5orf51A6NDU8 294 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF670-ZNF695F2Z2N8 137 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 MMP20O60882 483 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 GJA1P17302 382 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 GGT5P36269 586 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 SLC11A1P49279 550 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 KIAA1614Q5VZ46 1190 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 CEP97Q8IW35 865 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 PLEKHO2Q8TD55 490 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 FZD9O00144 591 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 FAM189A1O60320 539 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 KCNC4Q03721 635 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 CD47Q08722 323 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF763Q0D2J5 394 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 PRAMEF17Q5VTA0 474 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 ALG1LQ6GMV1 187 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 ANKFN1Q8N957 763 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 OTUB2Q96DC9 234 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 C11orf49Q9H6J7 331 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 RPF2Q9H7B2 306 aaKnown RBP13.15□□□□□ -0.3
SF3A1-201ENST00000215793 SIRPGQ9P1W8 387 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 MKLN1Q9UL63 735 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 WASHC1A8K0Z3 465 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 WASH3PC4AMC7 463 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 HSD11B1P28845 292 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 KLHL26Q53HC5 615 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 RUNDC3AQ59EK9 446 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 EOGTQ5NDL2 527 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 REEP3Q6NUK4 255 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 KLHDC10Q6PID8 442 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 WASH2PQ6VEQ5 465 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 INO80EQ8NBZ0 244 aaPredicted RBP13.15□□□□□ -0.3
SF3A1-201ENST00000215793 OR51B5Q9H339 312 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 VRTNQ9H8Y1 702 aa13.15□□□□□ -0.3
SF3A1-201ENST00000215793 PIRO00625 290 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 TLX2O43763 284 aaPredicted RBP13.15□□□□□ -0.31
SF3A1-201ENST00000215793 F8A1P23610 371 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 NUDT6P53370 316 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 TAS2R43P59537 309 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 RPS13P62277 151 aaKnown RBP13.15□□□□□ -0.31
SF3A1-201ENST00000215793 RABL3Q5HYI8 236 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 PYHIN1Q6K0P9 492 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 AMIGO1Q86WK6 493 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF382Q96SR6 550 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 TSSK6Q9BXA6 273 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 CHIAQ9BZP6 476 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 B4GALT6Q9UBX8 382 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 CYTH4Q9UIA0 394 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 FBXO9Q9UK97 447 aaPredicted RBP13.15□□□□□ -0.31
SF3A1-201ENST00000215793 MGAT4BQ9UQ53 548 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 RNF11Q9Y3C5 154 aa13.15□□□□□ -0.31
SF3A1-201ENST00000215793 PCDHGA12O60330 932 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 CNTN5O94779 1100 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 PLGP00747 810 aaPredicted RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 BNIP3Q12983 259 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 INAVAQ3KP66 663 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF783Q6ZMS7 281 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 GHDCQ8N2G8 530 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF366Q8N895 744 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 DDX1Q92499 740 aaKnown RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 TMEM203Q969S6 136 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 DMRTB1Q96MA1 342 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 TMEM74Q96NL1 305 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 NLGN3Q9NZ94 848 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 WNT6Q9Y6F9 365 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 H0YJX3 145 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 IFNA21P01568 189 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 SLC6A9P48067 706 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 CDH15P55291 814 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 PPP1R8Q12972 351 aaKnown RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 SNTA1Q13424 505 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 TSC22D1Q15714 1073 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 YIPF7Q8N8F6 280 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 NXPE2Q96DL1 559 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 DLGAP4Q9Y2H0 992 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 WDR45Q9Y484 360 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 CFAP20Q9Y6A4 193 aaKnown RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 NFKBIEO00221 500 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 GRID2O43424 1007 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 RPL10P27635 214 aaKnown RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 ACADVLP49748 655 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 RAB8AP61006 207 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 TSTQ16762 297 aaKnown RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF101Q8IZC7 436 aa13.14□□□□□ -0.31
SF3A1-201ENST00000215793 CPNE2Q96FN4 548 aaPredicted RBP13.14□□□□□ -0.31
SF3A1-201ENST00000215793 BRD7Q9NPI1 651 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms